Class HeatmapDataValueObject.FactorEntry

java.lang.Object

ubic.gemma.rest.HeatmapDataValueObject.FactorEntry

Enclosing class:

HeatmapDataValueObject

public static class HeatmapDataValueObject.FactorEntry
extends Object

One ExperimentalFactorValueObject plus, for continuous factors, the per-sample measurement map (keyed by bioAssayId). Kept on this wrapper rather than on the shared ExperimentalFactorValueObject so the VO's payload elsewhere stays unchanged.

Author:

claude

Constructor Summary

Constructors

Constructor	Description
FactorEntry()
FactorEntry(ExperimentalFactorValueObject factor, LinkedHashMap<Long,Double> measurements)

Method Summary

Modifier and Type	Method	Description
ExperimentalFactorValueObject	getFactor()	Full factor VO: id, name, description, type, category(+Uri), values (with statements + is_baseline + measurement), baseline_relevance, baseline_relevance_reason.
Map<Long,Double>	getMeasurements()	bioAssayId -> measurement value.
void	setFactor(ExperimentalFactorValueObject factor)	Full factor VO: id, name, description, type, category(+Uri), values (with statements + is_baseline + measurement), baseline_relevance, baseline_relevance_reason.
void	setMeasurements(Map<Long,Double> measurements)	bioAssayId -> measurement value.

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

FactorEntry

public FactorEntry()

FactorEntry

public FactorEntry(ExperimentalFactorValueObject factor,
 @Nullable
 LinkedHashMap<Long,Double> measurements)

Method Details

getFactor

public ExperimentalFactorValueObject getFactor()

Full factor VO: id, name, description, type, category(+Uri), values (with statements + is_baseline + measurement), baseline_relevance, baseline_relevance_reason.

getMeasurements

@Nullable
public Map<Long,Double> getMeasurements()

bioAssayId -> measurement value. Continuous factors only; null/absent on categorical factors. Sample identity is bioAssayId because the column-axis of the heatmap is keyed by BioAssay (a single BioMaterial may have multiple assays).

setFactor

public void setFactor(ExperimentalFactorValueObject factor)

Full factor VO: id, name, description, type, category(+Uri), values (with statements + is_baseline + measurement), baseline_relevance, baseline_relevance_reason.

setMeasurements

public void setMeasurements(@Nullable
 Map<Long,Double> measurements)

bioAssayId -> measurement value. Continuous factors only; null/absent on categorical factors. Sample identity is bioAssayId because the column-axis of the heatmap is keyed by BioAssay (a single BioMaterial may have multiple assays).