Class GeneWebService.CompositeSequenceSummaryValueObject

java.lang.Object

ubic.gemma.rest.GeneWebService.CompositeSequenceSummaryValueObject

All Implemented Interfaces:

Serializable

Enclosing class:

GeneWebService

public static class GeneWebService.CompositeSequenceSummaryValueObject
extends Object
implements Serializable

Enriched per-probe row returned by GeneWebService.getGeneProbes(GeneArg, OffsetArg, LimitArg, CursorArg, boolean) when summary=true. Replaces the legacy DWR CompositeSequenceController.getGeneCsSummaries shape: for each probe (composite sequence) on the page, carries the thin probe VO plus the list of genes this probe maps to and the distinct-BLAT-hit count.

numGenes duplicates genes.size() as a UI convenience (avoids forcing the client to count when only the cardinality matters). numBlatHits is the count of distinct sequence-similarity hits (chrom + target-start + target-end + target-starts + query-sequence), aggregated by ArrayDesignMapResultService; null when the probe has no sequence-analysis rows.

Author:

tesarst

See Also:

• Serialized Form

Constructor Summary

Constructors

Constructor	Description
CompositeSequenceSummaryValueObject(CompositeSequenceValueObject probe, List<GeneValueObject> genes, int numGenes, Integer numBlatHits)

Method Summary

Modifier and Type	Method	Description
protected boolean	canEqual(Object other)
boolean	equals(Object o)
List<GeneValueObject>	getGenes()
Integer	getNumBlatHits()
int	getNumGenes()
CompositeSequenceValueObject	getProbe()
int	hashCode()
String	toString()

Methods inherited from class Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

CompositeSequenceSummaryValueObject

public CompositeSequenceSummaryValueObject(CompositeSequenceValueObject probe,
 List<GeneValueObject> genes,
 int numGenes,
 @Nullable
 Integer numBlatHits)

Method Details

getProbe

public CompositeSequenceValueObject getProbe()

getGenes

public List<GeneValueObject> getGenes()

getNumGenes

public int getNumGenes()

getNumBlatHits

@Nullable
public Integer getNumBlatHits()

equals

public boolean equals(Object o)

Overrides:

equals in class Object

canEqual

protected boolean canEqual(Object other)

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object