Package ubic.gemma.core.analysis.preprocess.batcheffects

Class BatchConfoundUtils

java.lang.Object

ubic.gemma.core.analysis.preprocess.batcheffects.BatchConfoundUtils

@Service
public class BatchConfoundUtils
extends Object

Test if an experimental design is confounded with batches.

Author:

paul

See Also:

• BatchConfound

Constructor Summary

Constructors

Constructor	Description
BatchConfoundUtils()

Method Summary

Modifier and Type	Method	Description
static Collection<BatchConfound>	test(BioAssaySet ee)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

BatchConfoundUtils

public BatchConfoundUtils()

Method Details

test

public static Collection<BatchConfound> test(BioAssaySet ee)

Parameters:

ee - experiment or experiment subset

Returns:

collection of confounds (one for each confounded factor)