ubic.gemma.core.analysis.preprocess.batcheffects.AgilentScanDateExtractor

public class AgilentScanDateExtractor extends BaseScanDateExtractor

Because agilent makes slides that work with any scanner, the formats are not that predictable. I've seen these so far:

GPR format format.
Agilent scanner files. These start with "TYPE" Example: GSE14466. The second line is "FEPARAMS", the fourth column is "Scan_date". The data are in the third line.

Field Details
- AGILENT_DATE_PATTERN
  public static final String AGILENT_DATE_PATTERN
  
  See Also:
  
  Constant Field Values
Constructor Details
- AgilentScanDateExtractor
  
  public AgilentScanDateExtractor()
Method Details
- newAgilentDateFormat
  
  public static DateFormat newAgilentDateFormat()
  
  Each call returns a fresh SimpleDateFormat: SDF is not thread-safe and was previously a shared mutable static field (with per-call setLenient(true)) — a latent race when multiple platform loads ran concurrently. Allocation cost is negligible compared with the surrounding I/O.
- extract
  
  public Date extract(InputStream is) throws IOException, ParseException
  
  Throws:
  
  IOException
  
  ParseException

Class AgilentScanDateExtractor

Field Summary