AgilentScanDateExtractor (Gemma 1.31.4 API)

java.lang.Object
- ubic.gemma.core.analysis.preprocess.batcheffects.BaseScanDateExtractor
- - ubic.gemma.core.analysis.preprocess.batcheffects.AgilentScanDateExtractor

All Implemented Interfaces:

ScanDateExtractor
```
public class AgilentScanDateExtractor
extends BaseScanDateExtractor
```
Because agilent makes slides that work with any scanner, the formats are not that predictable. I've seen these so far:
- GPR format format.
- Agilent scanner files. These start with "TYPE" Example: GSE14466. The second line is "FEPARAMS", the fourth column is "Scan_date". The data are in the third line.
Author:

paul

- Field Summary
  
  Fields
  Modifier and Type Field Description
  
  static DateFormat AGILENT_DATE_FORMAT
  - Fields inherited from class ubic.gemma.core.analysis.preprocess.batcheffects.BaseScanDateExtractor
    GENEPIX_DATETIME_HEADER_REGEXP
- Constructor Summary
  
  Constructors
  Constructor Description
  
  AgilentScanDateExtractor()
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method Description
  
  Date extract(InputStream is)
  - Methods inherited from class ubic.gemma.core.analysis.preprocess.batcheffects.BaseScanDateExtractor
    extractGenePix, parseGenePixDateTime, parseISO8601, parseLongFormat, parseStandardFormat
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

AGILENT_DATE_FORMAT

public static DateFormat AGILENT_DATE_FORMAT

Constructor Detail
- AgilentScanDateExtractor
```
public AgilentScanDateExtractor()
```

Method Detail

extract

public Date extract(InputStream is)
             throws IOException,
                    ParseException

Throws:: IOException; ParseException