BatchEffectDetails.BatchEffectStatistics (Gemma 1.32.3 API)

java.lang.Object

ubic.gemma.core.analysis.preprocess.batcheffects.BatchEffectDetails.BatchEffectStatistics

Enclosing class:: BatchEffectDetails

public class BatchEffectDetails.BatchEffectStatistics extends Object

Method Summary

Modifier and Type

Method

Description

int

getComponent()

A PCA component that is explained by the batch factor.

double

getComponentVarianceProportion()

The variance explained by the component.

double

getPvalue()

A P-value statistic for that component.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details
- getComponent
  
  public int getComponent()
  
  A PCA component that is explained by the batch factor. It is 1-based.
- getComponentVarianceProportion
  
  public double getComponentVarianceProportion()
  
  The variance explained by the component.
- getPvalue
  
  public double getPvalue()
  
  A P-value statistic for that component.