Package ubic.gemma.core.analysis.preprocess.qc

package ubic.gemma.core.analysis.preprocess.qc

Related Packages

Package	Description
ubic.gemma.core.analysis.preprocess	This package contains classes for preprocessing expression data.

Class	Description
SequencingQcMetrics	Per-sample sequencing QC metrics for one experiment, read out of the RNA-Seq pipeline's MultiQC report and joined to the experiment's BioAssays.
SequencingQcMetrics.MetricDefinition	A metric column as MultiQC describes it.
SequencingQcMetrics.RunMetrics	One report row below the sample level — a sequencing run, or one mate of a paired run.
SequencingQcMetrics.SampleMetrics	The metrics resolved for a single bioAssay.
SequencingQcMetricsService	Reads the per-sample sequencing QC metrics the RNA-Seq pipeline's MultiQC report carries, and joins them to the experiment's bioAssays.
SequencingQcMetricsServiceImpl	Streams report_general_stats_data out of the MultiQC report and resolves its row keys to bioAssays.