Package ubic.gemma.core.analysis.sequence

Class ProbeMapUtils

java.lang.Object

ubic.gemma.core.analysis.sequence.ProbeMapUtils

public class ProbeMapUtils
extends Object

Author:

paul

Constructor Summary

Constructors

Constructor	Description
ProbeMapUtils()

Method Summary

Modifier and Type	Method	Description
static Integer	hashBlatResult(BlatResult br)	Compute a hash for the result based only on the characteristics of the alignment (that is, not the Id)
static Integer	hashBlatResult(BlatResultValueObject br)	Compute a hash for the result based only on the characteristics of the alignment (that is, not the Id)
static void	removeDuplicates(Collection<BlatResult> blatResults)	Prune a set of results that have the same coordinates and query.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ProbeMapUtils

public ProbeMapUtils()

Method Details

removeDuplicates

public static void removeDuplicates(Collection<BlatResult> blatResults)

Prune a set of results that have the same coordinates and query. See bug 4037

Parameters:

blatResults - blat results

hashBlatResult

public static Integer hashBlatResult(BlatResult br)

Compute a hash for the result based only on the characteristics of the alignment (that is, not the Id)

Parameters:

br - br

Returns:

integer

hashBlatResult

public static Integer hashBlatResult(BlatResultValueObject br)

Compute a hash for the result based only on the characteristics of the alignment (that is, not the Id)

Parameters:

br - br

Returns:

integer