Package ubic.gemma.model.genome.sequenceAnalysis

Class BlatResult

java.lang.Object
ubic.gemma.model.common.AbstractIdentifiable
ubic.gemma.model.genome.sequenceAnalysis.SequenceSimilaritySearchResult
ubic.gemma.model.genome.sequenceAnalysis.BlatResult
All Implemented Interfaces:
Identifiable
public class BlatResult extends SequenceSimilaritySearchResult
Represents the result of a BLAT search. The column names follow the convention of Kent et al.

  • Constructor Details

    • BlatResult

      public BlatResult()

  • Method Details

    • toString

      public String toString()
      Overrides:
      toString in class AbstractIdentifiable

    • getBlockCount

      public Integer getBlockCount()

    • getBlockSizes

      public String getBlockSizes()

    • getMatches

      public Integer getMatches()

    • getMismatches

      public Integer getMismatches()

    • getNs

      public Integer getNs()

    • getQueryEnd

      public Integer getQueryEnd()

    • getQueryGapBases

      public Integer getQueryGapBases()

    • getQueryGapCount

      public Integer getQueryGapCount()

    • getQueryStart

      public Integer getQueryStart()

    • getQueryStarts

      public String getQueryStarts()

    • getRepMatches

      public Integer getRepMatches()

    • getStrand

      public String getStrand()

    • getTargetEnd

      public Long getTargetEnd()

    • getTargetGapBases

      public Integer getTargetGapBases()

    • getTargetGapCount

      public Integer getTargetGapCount()

    • getTargetStart

      public Long getTargetStart()

    • getTargetStarts

      public String getTargetStarts()

    • setBlockCount

      public void setBlockCount(Integer blockCount)

    • setBlockSizes

      public void setBlockSizes(String blockSizes)

    • setMatches

      public void setMatches(Integer matches)

    • setMismatches

      public void setMismatches(Integer mismatches)

    • setNs

      public void setNs(Integer ns)

    • setQueryEnd

      public void setQueryEnd(Integer queryEnd)

    • setQueryGapBases

      public void setQueryGapBases(Integer queryGapBases)

    • setQueryGapCount

      public void setQueryGapCount(Integer queryGapCount)

    • setQueryStart

      public void setQueryStart(Integer queryStart)

    • setQueryStarts

      public void setQueryStarts(String queryStarts)

    • setRepMatches

      public void setRepMatches(Integer repMatches)

    • setStrand

      public void setStrand(String strand)

    • setTargetEnd

      public void setTargetEnd(Long targetEnd)

    • setTargetGapBases

      public void setTargetGapBases(Integer targetGapBases)

    • setTargetGapCount

      public void setTargetGapCount(Integer targetGapCount)

    • setTargetStart

      public void setTargetStart(Long targetStart)

    • setTargetStarts

      public void setTargetStarts(String targetStarts)

    • equals

      public boolean equals(Object o)
      Description copied from class: AbstractIdentifiable
      Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.
      Overrides:
      equals in class SequenceSimilaritySearchResult
      Returns:
      true if the argument is an SequenceSimilaritySearchResult instance and all identifiers for this entity equal the identifiers of the argument entity. Returns false otherwise.

    • canEqual

      protected boolean canEqual(Object other)

    • hashCode

      public int hashCode()
      Description copied from class: AbstractIdentifiable
      Important note: Never use the ID in the hashCode() implementation since it can be assigned when the object is persisted.
      Overrides:
      hashCode in class SequenceSimilaritySearchResult
      Returns:
      a hash code based on this entity's identifiers.