Package ubic.gemma.model.genome.sequenceAnalysis

Class SequenceSimilaritySearchResult

    • Constructor Detail

      • SequenceSimilaritySearchResult

        public SequenceSimilaritySearchResult()

    • Method Detail

      • getQuerySequence

        public BioSequence getQuerySequence()

      • setQuerySequence

        public void setQuerySequence​(BioSequence querySequence)

      • getSearchedDatabase

        public ExternalDatabase getSearchedDatabase()
        Returns:
        The database used for the search. This will be null if the comparison was just between two sequences.

      • setSearchedDatabase

        public void setSearchedDatabase​(ExternalDatabase searchedDatabase)

      • getTargetAlignedRegion

        public PhysicalLocation getTargetAlignedRegion()
        Returns:
        The region of the target spanned by the alignment.

      • setTargetAlignedRegion

        public void setTargetAlignedRegion​(PhysicalLocation targetAlignedRegion)

      • getTargetChromosome

        public Chromosome getTargetChromosome()

      • setTargetChromosome

        public void setTargetChromosome​(Chromosome targetChromosome)

      • getTargetSequence

        public BioSequence getTargetSequence()

      • setTargetSequence

        public void setTargetSequence​(BioSequence targetSequence)

      • hashCode

        public int hashCode()
        Description copied from class: AbstractIdentifiable
        Important note: Never use the ID in the hashCode() implementation since it can be assigned when the object is persisted.
        Specified by:
        hashCode in class AbstractIdentifiable
        Returns:
        a hash code based on this entity's identifiers.

      • equals

        public boolean equals​(Object object)
        Description copied from class: AbstractIdentifiable
        Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.
        Specified by:
        equals in class AbstractIdentifiable
        Returns:
        true if the argument is an SequenceSimilaritySearchResult instance and all identifiers for this entity equal the identifiers of the argument entity. Returns false otherwise.