Package ubic.gemma.core.association.phenotype

Class PhenotypeAssoManagerServiceHelperImpl

java.lang.Object

ubic.gemma.core.association.phenotype.PhenotypeAssoManagerServiceHelperImpl

All Implemented Interfaces:

PhenotypeAssoManagerServiceHelper

@Component
@Deprecated
public class PhenotypeAssoManagerServiceHelperImpl
extends Object
implements PhenotypeAssoManagerServiceHelper

Deprecated.

Author:

nicolas

See Also:

PhenotypeAssoManagerServiceHelper

Constructor Summary

Constructors

Constructor

Description

PhenotypeAssoManagerServiceHelperImpl(BibliographicReferenceService bibliographicReferenceService, CharacteristicService characteristicService, DatabaseEntryDao databaseEntryDao, ExternalDatabaseService externalDatabaseService, GeneDiffExMetaAnalysisService geneDiffExMetaAnalysisService, GeneService geneService, PhenotypeAssoOntologyHelper ontologyHelper, Persister persisterHelper, PhenotypeAssociationService phenotypeAssociationService, QuantitationTypeService quantitationTypeService)

Deprecated.

Method Summary

Modifier and Type	Method	Description
void	populateModifiedValues(EvidenceValueObject<? extends PhenotypeAssociation> evidenceValueObject, PhenotypeAssociation phenotypeAssociation)	Deprecated. load evidence from the database and populate it with the updated information
PhenotypeAssociation	valueObject2Entity(EvidenceValueObject<? extends PhenotypeAssociation> evidence)	Deprecated. Changes all type of evidenceValueObject to their corresponding entities

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PhenotypeAssoManagerServiceHelperImpl

@Autowired
public PhenotypeAssoManagerServiceHelperImpl(BibliographicReferenceService bibliographicReferenceService,
                                             CharacteristicService characteristicService,
                                             DatabaseEntryDao databaseEntryDao,
                                             ExternalDatabaseService externalDatabaseService,
                                             GeneDiffExMetaAnalysisService geneDiffExMetaAnalysisService,
                                             GeneService geneService,
                                             PhenotypeAssoOntologyHelper ontologyHelper,
                                             Persister persisterHelper,
                                             PhenotypeAssociationService phenotypeAssociationService,
                                             QuantitationTypeService quantitationTypeService)

Deprecated.

Method Detail

populateModifiedValues

public void populateModifiedValues(EvidenceValueObject<? extends PhenotypeAssociation> evidenceValueObject,
                                   PhenotypeAssociation phenotypeAssociation)

Deprecated.

Description copied from interface: PhenotypeAssoManagerServiceHelper

load evidence from the database and populate it with the updated information

Specified by:

populateModifiedValues in interface PhenotypeAssoManagerServiceHelper

Parameters:

evidenceValueObject - evidence VO

phenotypeAssociation - phenotype association

valueObject2Entity

public PhenotypeAssociation valueObject2Entity(EvidenceValueObject<? extends PhenotypeAssociation> evidence)

Deprecated.

Description copied from interface: PhenotypeAssoManagerServiceHelper

Changes all type of evidenceValueObject to their corresponding entities

Specified by:

valueObject2Entity in interface PhenotypeAssoManagerServiceHelper

Parameters:

evidence - the value object to change in an entity

Returns:

PhenotypeAssociation the entity created from the ValueObject