Package ubic.gemma.core.datastructure.matrix

Class AbstractExpressionDataMatrix<T>

java.lang.Object

ubic.gemma.core.datastructure.matrix.AbstractExpressionDataMatrix<T>

All Implemented Interfaces:

ExpressionDataMatrix<T>

Direct Known Subclasses:

AbstractBulkExpressionDataMatrix, AbstractMultiAssayExpressionDataMatrix, AbstractSingleCellExpressionDataMatrix, MaskedExpressionDataMatrix

public abstract class AbstractExpressionDataMatrix<T>
extends Object
implements ExpressionDataMatrix<T>

Constructor Summary

Constructors

Constructor	Description
AbstractExpressionDataMatrix()

Method Summary

Modifier and Type	Method	Description
protected String	format(double val)
protected String	format(int val)
protected abstract String	format(int i, int j)	Format a matrix entry at a particular row/column.
protected String	formatRepresentation()	Produce a string representation of the type of values held in the matrix.
protected abstract String	getColumnLabel(int j)	Obtain a label suitable for describing a column of the matrix.
protected abstract String	getRowLabel(int i)	Obtain a label suitable for describing a row of the matrix.
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.core.datastructure.matrix.ExpressionDataMatrix

columns, get, getColumn, getDesignElementForRow, getDesignElements, getExpressionExperiment, getQuantitationType, getRow, getRow, getRowElement, getRowElements, getRowIndex, getRowIndices, rows

Constructor Details

AbstractExpressionDataMatrix

public AbstractExpressionDataMatrix()

Method Details

toString

public String toString()

Overrides:

toString in class Object

formatRepresentation

protected String formatRepresentation()

Produce a string representation of the type of values held in the matrix.

getRowLabel

protected abstract String getRowLabel(int i)

Obtain a label suitable for describing a row of the matrix.

getColumnLabel

protected abstract String getColumnLabel(int j)

Obtain a label suitable for describing a column of the matrix.

format

protected abstract String format(int i,
 int j)

Format a matrix entry at a particular row/column.

format

protected String format(double val)

format

protected String format(int val)