Package ubic.gemma.core.datastructure.matrix
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Interface Summary Interface Description ExpressionDataMatrix<T> Represents a matrix of data from an expression experiment. -
Class Summary Class Description BaseExpressionDataMatrix<T> Base class for ExpressionDataMatrix implementations.EmptyExpressionMatrix Used to make a 'dummy matrix' that has the column information populated.ExperimentalDesignWriter Output compatible withExperimentalDesignImporterImpl
.ExpressionDataBooleanMatrix Matrix of booleans mapped from an ExpressionExperiment.ExpressionDataDoubleMatrix A data structure that holds a reference to the data for a given expression experiment.ExpressionDataDoubleMatrixUtil Perform various computations on ExpressionDataMatrices (usually in-place).ExpressionDataIntegerMatrix Warning, not fully tested.ExpressionDataMatrixColumnSort Methods to organize ExpressionDataMatrices by column (or at least provide the ordering).ExpressionDataMatrixRowElement Encapsulates information about the row 'label' for a ExpressionDataMatrix.ExpressionDataStringMatrix ExpressionDataWriterUtils MatrixWriter SuspiciousValuesForQuantitationException.SuspiciousValueResult -
Exception Summary Exception Description InferredQuantitationMismatchException Exception raised when the quantitation of anExpressionDataMatrix
does not agree with the one inferred.QuantitationMismatchException Exception raised when anExpressionDataMatrix
does not meet the expectations set by a givenQuantitationType
.QuantitationTypeConversionException Base class for representing problematicQuantitationType
conversion.SuspiciousValuesForQuantitationException Exception raised when suspicious values are detected in anExpressionDataMatrix
.