Uses of Package
ubic.gemma.core.datastructure.matrix
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Classes in ubic.gemma.core.datastructure.matrix used by ubic.gemma.core.analysis.expression.coexpression.links Class Description ExpressionDataDoubleMatrix A data structure that holds a reference to the data for a given expression experiment.ExpressionDataMatrixRowElement Encapsulates information about the row 'label' for a ExpressionDataMatrix. -
Classes in ubic.gemma.core.datastructure.matrix used by ubic.gemma.core.analysis.expression.diff Class Description ExpressionDataDoubleMatrix A data structure that holds a reference to the data for a given expression experiment.ExpressionDataMatrix Represents a matrix of data from an expression experiment. -
Classes in ubic.gemma.core.datastructure.matrix used by ubic.gemma.core.analysis.preprocess Class Description ExpressionDataBooleanMatrix Matrix of booleans mapped from an ExpressionExperiment.ExpressionDataDoubleMatrix A data structure that holds a reference to the data for a given expression experiment.ExpressionDataMatrix Represents a matrix of data from an expression experiment.QuantitationMismatchException Exception raised when anExpressionDataMatrixdoes not meet the expectations set by a givenQuantitationType.QuantitationTypeConversionException Base class for representing problematicQuantitationTypeconversion. -
Classes in ubic.gemma.core.datastructure.matrix used by ubic.gemma.core.analysis.preprocess.batcheffects Class Description ExpressionDataDoubleMatrix A data structure that holds a reference to the data for a given expression experiment. -
Classes in ubic.gemma.core.datastructure.matrix used by ubic.gemma.core.analysis.preprocess.filter Class Description ExpressionDataBooleanMatrix Matrix of booleans mapped from an ExpressionExperiment.ExpressionDataDoubleMatrix A data structure that holds a reference to the data for a given expression experiment. -
Classes in ubic.gemma.core.datastructure.matrix used by ubic.gemma.core.analysis.preprocess.svd Class Description ExpressionDataDoubleMatrix A data structure that holds a reference to the data for a given expression experiment. -
Classes in ubic.gemma.core.datastructure.matrix used by ubic.gemma.core.analysis.service Class Description ExpressionDataDoubleMatrix A data structure that holds a reference to the data for a given expression experiment. -
Classes in ubic.gemma.core.datastructure.matrix used by ubic.gemma.core.datastructure.matrix Class Description BaseExpressionDataMatrix Base class for ExpressionDataMatrix implementations.ExpressionDataBooleanMatrix Matrix of booleans mapped from an ExpressionExperiment.ExpressionDataDoubleMatrix A data structure that holds a reference to the data for a given expression experiment.ExpressionDataMatrix Represents a matrix of data from an expression experiment.ExpressionDataMatrixRowElement Encapsulates information about the row 'label' for a ExpressionDataMatrix.QuantitationMismatchException Exception raised when anExpressionDataMatrixdoes not meet the expectations set by a givenQuantitationType.SuspiciousValuesForQuantitationException Exception raised when suspicious values are detected in anExpressionDataMatrix.SuspiciousValuesForQuantitationException.SuspiciousValueResult -
Classes in ubic.gemma.core.datastructure.matrix used by ubic.gemma.core.loader.expression Class Description ExpressionDataDoubleMatrix A data structure that holds a reference to the data for a given expression experiment. -
Classes in ubic.gemma.core.datastructure.matrix used by ubic.gemma.model.expression.experiment Class Description ExpressionDataDoubleMatrix A data structure that holds a reference to the data for a given expression experiment. -
Classes in ubic.gemma.core.datastructure.matrix used by ubic.gemma.persistence.service.expression.bioAssayData Class Description QuantitationMismatchException Exception raised when anExpressionDataMatrixdoes not meet the expectations set by a givenQuantitationType.