Package ubic.gemma.model.common.quantitationtype

Class QuantitationType

java.lang.Object

ubic.gemma.model.common.AbstractIdentifiable

ubic.gemma.model.common.AbstractDescribable

ubic.gemma.model.common.quantitationtype.QuantitationType

All Implemented Interfaces:

Describable, Identifiable

public class QuantitationType
extends AbstractDescribable

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	QuantitationType.Factory

Constructor Summary

Constructors

Constructor	Description
QuantitationType()

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object object)	Important note: Two objects with the same class and non-null ID must be considered equal.
GeneralType	getGeneralType()
boolean	getIsBackground()
boolean	getIsBackgroundSubtracted()
boolean	getIsBatchCorrected()
boolean	getIsMaskedPreferred()	Deprecated.
boolean	getIsNormalized()
boolean	getIsPreferred()
boolean	getIsRatio()
boolean	getIsRecomputedFromRawData()
boolean	getIsSingleCellPreferred()
PrimitiveType	getRepresentation()
ScaleType	getScale()
StandardQuantitationType	getType()
int	hashCode()	Important note: Never use the ID in the hashCode() implementation since it can be assigned when the object is persisted.
void	setGeneralType(GeneralType generalType)
void	setIsBackground(boolean isBackground)
void	setIsBackgroundSubtracted(boolean isBackgroundSubtracted)
void	setIsBatchCorrected(boolean isBatchCorrected)
void	setIsMaskedPreferred(boolean isMaskedPreferred)	Deprecated.
void	setIsNormalized(boolean isNormalized)
void	setIsPreferred(boolean isPreferred)
void	setIsRatio(boolean isRatio)
void	setIsRecomputedFromRawData(boolean isRecomputedFromRawData)
void	setIsSingleCellPreferred(boolean singleCellPreferred)
void	setRepresentation(PrimitiveType representation)
void	setScale(ScaleType scale)
void	setType(StandardQuantitationType type)
String	toString()

Methods inherited from class ubic.gemma.model.common.AbstractDescribable

getDescription, getName, setDescription, setName

Methods inherited from class ubic.gemma.model.common.AbstractIdentifiable

getId, setId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.model.common.Identifiable

getId

Constructor Detail

QuantitationType

public QuantitationType()

Method Detail

getGeneralType

public GeneralType getGeneralType()

setGeneralType

public void setGeneralType(GeneralType generalType)

getIsBackground

public boolean getIsBackground()

Returns:

True if this is just a background measurement.

setIsBackground

public void setIsBackground(boolean isBackground)

getIsBackgroundSubtracted

public boolean getIsBackgroundSubtracted()

Returns:

True if this is explicitly background-subtracted by Gemma (if it was background-subtracted before the data got to us, we might not know)

setIsBackgroundSubtracted

public void setIsBackgroundSubtracted(boolean isBackgroundSubtracted)

getIsBatchCorrected

public boolean getIsBatchCorrected()

setIsBatchCorrected

public void setIsBatchCorrected(boolean isBatchCorrected)

getIsMaskedPreferred

@Deprecated
public boolean getIsMaskedPreferred()

Deprecated.

setIsMaskedPreferred

@Deprecated
public void setIsMaskedPreferred(boolean isMaskedPreferred)

Deprecated.

getIsNormalized

public boolean getIsNormalized()

setIsNormalized

public void setIsNormalized(boolean isNormalized)

getIsSingleCellPreferred

public boolean getIsSingleCellPreferred()

setIsSingleCellPreferred

public void setIsSingleCellPreferred(boolean singleCellPreferred)

getIsPreferred

public boolean getIsPreferred()

setIsPreferred

public void setIsPreferred(boolean isPreferred)

getIsRatio

public boolean getIsRatio()

Returns:

Indicates whether the quantitation type is expressed as a ratio (e.g., of expression to a reference or pseudo-reference). This has a natural impact on the interpretation. If false, the value is "absolute".

setIsRatio

public void setIsRatio(boolean isRatio)

getIsRecomputedFromRawData

public boolean getIsRecomputedFromRawData()

Returns:

the isRecomputedFromRawData

setIsRecomputedFromRawData

public void setIsRecomputedFromRawData(boolean isRecomputedFromRawData)

Parameters:

isRecomputedFromRawData - the isRecomputedFromRawData to set

getRepresentation

public PrimitiveType getRepresentation()

setRepresentation

public void setRepresentation(PrimitiveType representation)

getScale

public ScaleType getScale()

setScale

public void setScale(ScaleType scale)

getType

public StandardQuantitationType getType()

setType

public void setType(StandardQuantitationType type)

equals

public boolean equals(Object object)

Description copied from class: AbstractIdentifiable

Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.

Specified by:

equals in class AbstractIdentifiable

hashCode

public int hashCode()

Description copied from class: AbstractIdentifiable

Important note: Never use the ID in the hashCode() implementation since it can be assigned when the object is persisted.

Overrides:

hashCode in class AbstractDescribable

toString

public String toString()

Overrides:

toString in class AbstractDescribable