Package ubic.gemma.model.common.quantitationtype

Class QuantitationType

java.lang.Object

ubic.gemma.model.common.AbstractDescribable

ubic.gemma.model.common.quantitationtype.QuantitationType

All Implemented Interfaces:

Serializable, Describable, Identifiable

public class QuantitationType
extends AbstractDescribable
implements Serializable

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	QuantitationType.Factory

Constructor Summary

Constructors

Constructor	Description
QuantitationType()	No-arg constructor added to satisfy javabean contract

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object object)	Returns true if the argument is an Describable instance and all identifiers for this entity equal the identifiers of the argument entity.
GeneralType	getGeneralType()
boolean	getIsBackground()
boolean	getIsBackgroundSubtracted()
boolean	getIsBatchCorrected()
boolean	getIsMaskedPreferred()	Deprecated.
boolean	getIsNormalized()
boolean	getIsPreferred()
boolean	getIsRatio()
boolean	getIsRecomputedFromRawData()
PrimitiveType	getRepresentation()
ScaleType	getScale()
StandardQuantitationType	getType()
int	hashCode()	Returns a hash code based on this entity's identifiers.
void	setGeneralType(GeneralType generalType)
void	setIsBackground(boolean isBackground)
void	setIsBackgroundSubtracted(boolean isBackgroundSubtracted)
void	setIsBatchCorrected(boolean isBatchCorrected)
void	setIsMaskedPreferred(boolean isMaskedPreferred)	Deprecated.
void	setIsNormalized(boolean isNormalized)
void	setIsPreferred(boolean isPreferred)
void	setIsRatio(boolean isRatio)
void	setIsRecomputedFromRawData(boolean isRecomputedFromRawData)
void	setRepresentation(PrimitiveType representation)
void	setScale(ScaleType scale)
void	setType(StandardQuantitationType type)
String	toString()

Methods inherited from class ubic.gemma.model.common.AbstractDescribable

getDescription, getId, getName, setDescription, setId, setName

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

QuantitationType

public QuantitationType()

No-arg constructor added to satisfy javabean contract

Method Detail

getGeneralType

public GeneralType getGeneralType()

setGeneralType

public void setGeneralType(GeneralType generalType)

getIsBackground

public boolean getIsBackground()

Returns:

True if this is just a background measurement.

setIsBackground

public void setIsBackground(boolean isBackground)

getIsBackgroundSubtracted

public boolean getIsBackgroundSubtracted()

Returns:

True if this is explicitly background-subtracted by Gemma (if it was background-subtracted before the data got to us, we might not know)

setIsBackgroundSubtracted

public void setIsBackgroundSubtracted(boolean isBackgroundSubtracted)

getIsBatchCorrected

public boolean getIsBatchCorrected()

setIsBatchCorrected

public void setIsBatchCorrected(boolean isBatchCorrected)

getIsMaskedPreferred

@Deprecated
public boolean getIsMaskedPreferred()

Deprecated.

Returns:

If the data represented is a missing-value masked version of the preferred data.

setIsMaskedPreferred

@Deprecated
public void setIsMaskedPreferred(boolean isMaskedPreferred)

Deprecated.

getIsNormalized

public boolean getIsNormalized()

setIsNormalized

public void setIsNormalized(boolean isNormalized)

getIsPreferred

public boolean getIsPreferred()

setIsPreferred

public void setIsPreferred(boolean isPreferred)

getIsRatio

public boolean getIsRatio()

Returns:

Indicates whether the quantitation type is expressed as a ratio (e.g., of expression to a reference or pseudo-reference). This has a natural impact on the interpretation. If false, the value is "absolute".

setIsRatio

public void setIsRatio(boolean isRatio)

getIsRecomputedFromRawData

public boolean getIsRecomputedFromRawData()

Returns:

the isRecomputedFromRawData

setIsRecomputedFromRawData

public void setIsRecomputedFromRawData(boolean isRecomputedFromRawData)

Parameters:

isRecomputedFromRawData - the isRecomputedFromRawData to set

getRepresentation

public PrimitiveType getRepresentation()

setRepresentation

public void setRepresentation(PrimitiveType representation)

getScale

public ScaleType getScale()

setScale

public void setScale(ScaleType scale)

getType

public StandardQuantitationType getType()

setType

public void setType(StandardQuantitationType type)

equals

public boolean equals(Object object)

Description copied from class: AbstractDescribable

Returns true if the argument is an Describable instance and all identifiers for this entity equal the identifiers of the argument entity. Returns false otherwise.

Overrides:

equals in class AbstractDescribable

hashCode

public int hashCode()

Description copied from class: AbstractDescribable

Returns a hash code based on this entity's identifiers.

Overrides:

hashCode in class AbstractDescribable

toString

public String toString()

Overrides:

toString in class AbstractDescribable

See Also:

AbstractDescribable.toString()