Package ubic.gemma.model.common.quantitationtype

Class QuantitationType

java.lang.Object
ubic.gemma.model.common.AbstractIdentifiable
ubic.gemma.model.common.AbstractDescribable
ubic.gemma.model.common.quantitationtype.QuantitationType
All Implemented Interfaces:
Describable, Identifiable
public class QuantitationType extends AbstractDescribable

  • Constructor Details

    • QuantitationType

      public QuantitationType()

  • Method Details

    • getGeneralType

      public GeneralType getGeneralType()

    • setGeneralType

      public void setGeneralType(GeneralType generalType)

    • getIsBackground

      public boolean getIsBackground()
      Returns:
      True if this is just a background measurement.

    • setIsBackground

      public void setIsBackground(boolean isBackground)

    • getIsBackgroundSubtracted

      public boolean getIsBackgroundSubtracted()
      Returns:
      True if this is explicitly background-subtracted by Gemma (if it was background-subtracted before the data got to us, we might not know)

    • setIsBackgroundSubtracted

      public void setIsBackgroundSubtracted(boolean isBackgroundSubtracted)

    • getIsBatchCorrected

      public boolean getIsBatchCorrected()

    • setIsBatchCorrected

      public void setIsBatchCorrected(boolean isBatchCorrected)

    • getIsMaskedPreferred

      @Deprecated public boolean getIsMaskedPreferred()
      Deprecated.

    • setIsMaskedPreferred

      @Deprecated public void setIsMaskedPreferred(boolean isMaskedPreferred)
      Deprecated.

    • getIsNormalized

      public boolean getIsNormalized()

    • setIsNormalized

      public void setIsNormalized(boolean isNormalized)

    • getIsSingleCellPreferred

      public boolean getIsSingleCellPreferred()

    • setIsSingleCellPreferred

      public void setIsSingleCellPreferred(boolean singleCellPreferred)

    • getIsPreferred

      public boolean getIsPreferred()

    • setIsPreferred

      public void setIsPreferred(boolean isPreferred)

    • getIsRatio

      public boolean getIsRatio()
      Returns:
      Indicates whether the quantitation type is expressed as a ratio (e.g., of expression to a reference or pseudo-reference). This has a natural impact on the interpretation. If false, the value is "absolute".

    • setIsRatio

      public void setIsRatio(boolean isRatio)

    • getIsRecomputedFromRawData

      public boolean getIsRecomputedFromRawData()
      Returns:
      the isRecomputedFromRawData

    • setIsRecomputedFromRawData

      public void setIsRecomputedFromRawData(boolean isRecomputedFromRawData)
      Parameters:
      isRecomputedFromRawData - the isRecomputedFromRawData to set

    • getRepresentation

      public PrimitiveType getRepresentation()

    • setRepresentation

      public void setRepresentation(PrimitiveType representation)

    • getScale

      public ScaleType getScale()

    • setScale

      public void setScale(ScaleType scale)

    • getType

      public StandardQuantitationType getType()

    • setType

      public void setType(StandardQuantitationType type)

    • equals

      public boolean equals(Object object)
      Description copied from class: AbstractIdentifiable
      Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.
      Specified by:
      equals in class AbstractIdentifiable

    • hashCode

      public int hashCode()
      Description copied from class: AbstractIdentifiable
      Important note: Never use the ID in the hashCode() implementation since it can be assigned when the object is persisted.
      Overrides:
      hashCode in class AbstractDescribable

    • toString

      public String toString()
      Overrides:
      toString in class AbstractDescribable