Package ubic.gemma.model.common.quantitationtype

Enum StandardQuantitationType

java.lang.Object

java.lang.Enum<StandardQuantitationType>

ubic.gemma.model.common.quantitationtype.StandardQuantitationType

All Implemented Interfaces:

Serializable, Comparable<StandardQuantitationType>

public enum StandardQuantitationType
extends Enum<StandardQuantitationType>

Enum Constant Summary

Enum Constants

Enum Constant	Description
AMOUNT	Referring to a measured or derived "amount", indicating the relative or absolute level of something.
CONFIDENCEINDICATOR	Indicate a confidence level.
COORDINATE	Used to represent a value for a spatial coordinate.
CORRELATION	Indicate a correlation value.
COUNT	Indicates value is a count, such as the number of sequencing reads.
FAILED	Indicate if a failure occurred for a given value or not.
OTHER	Use this for all other types including unknown.
PRESENTABSENT	Indicate if a value is present or absent.
ZSCORE	Standard deviations from the mean.

Method Summary

Modifier and Type	Method	Description
static StandardQuantitationType	valueOf(String name)	Returns the enum constant of this type with the specified name.
static StandardQuantitationType[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

PRESENTABSENT

public static final StandardQuantitationType PRESENTABSENT

Indicate if a value is present or absent.

This type is generally used for masking another data vector.

Only PrimitiveType.BOOLEAN is allowed.

FAILED

public static final StandardQuantitationType FAILED

Indicate if a failure occurred for a given value or not.

Only PrimitiveType.BOOLEAN is allowed.

AMOUNT

public static final StandardQuantitationType AMOUNT

Referring to a measured or derived "amount", indicating the relative or absolute level of something.

Typically, an expression level or expression ratio. This is intentionally very generic.

Only PrimitiveType.INT, PrimitiveType.LONG and PrimitiveType.DOUBLE are allowed.

CONFIDENCEINDICATOR

public static final StandardQuantitationType CONFIDENCEINDICATOR

Indicate a confidence level.

Only PrimitiveType.DOUBLE is allowed.

CORRELATION

public static final StandardQuantitationType CORRELATION

Indicate a correlation value.

Only PrimitiveType.DOUBLE is allowed.

COUNT

public static final StandardQuantitationType COUNT

Indicates value is a count, such as the number of sequencing reads.

Only PrimitiveType.INT, PrimitiveType.LONG and PrimitiveType.DOUBLE are allowed. In the case of a double representation, the counts may be *adjusted* or transformed as per ScaleType.

COORDINATE

public static final StandardQuantitationType COORDINATE

Used to represent a value for a spatial coordinate.

This is not really supported, so no representation is specified.

ZSCORE

public static final StandardQuantitationType ZSCORE

Standard deviations from the mean.

Only PrimitiveType.DOUBLE is allowed.

OTHER

public static final StandardQuantitationType OTHER

Use this for all other types including unknown.

Method Detail

values

public static StandardQuantitationType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (StandardQuantitationType c : StandardQuantitationType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static StandardQuantitationType valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null