Uses of Interface
ubic.gemma.core.datastructure.matrix.SingleCellExpressionDataMatrix

Packages that use SingleCellExpressionDataMatrix

Package	Description
ubic.gemma.core.analysis.singleCell.aggregate	This packge contains classes for splitting and aggregating single-cell data.
ubic.gemma.core.datastructure.matrix	This package contains data structures for representing matrices of gene expression.
ubic.gemma.core.datastructure.matrix.io	This package contains I/O utilities for reading and writing expression data matrices.
ubic.gemma.persistence.service.expression.experiment

Uses of SingleCellExpressionDataMatrix in ubic.gemma.core.analysis.singleCell.aggregate

Methods in ubic.gemma.core.analysis.singleCell.aggregate with parameters of type SingleCellExpressionDataMatrix

Modifier and Type	Method	Description
static <T> BulkExpressionDataMatrix<T>	SingleCellDataVectorAggregatorUtils.aggregate(SingleCellExpressionDataMatrix<T> scMatrix, SingleCellDataVectorAggregatorUtils.SingleCellAggregationMethod method, Class<T> scalarType)	Aggregate a single-cell data matrix.

Uses of SingleCellExpressionDataMatrix in ubic.gemma.core.datastructure.matrix

Classes in ubic.gemma.core.datastructure.matrix that implement SingleCellExpressionDataMatrix

Modifier and Type	Class	Description
class	SingleCellExpressionDataDoubleMatrix
class	SingleCellExpressionDataIntMatrix

Uses of SingleCellExpressionDataMatrix in ubic.gemma.core.datastructure.matrix.io

Methods in ubic.gemma.core.datastructure.matrix.io with parameters of type SingleCellExpressionDataMatrix

Modifier and Type	Method	Description
int	MexMatrixWriter.write(SingleCellExpressionDataMatrix<?> matrix, OutputStream stream)
int	MexMatrixWriter.write(SingleCellExpressionDataMatrix<?> matrix, Writer stream)
int	MexMatrixWriter.write(SingleCellExpressionDataMatrix<?> matrix, Map<CompositeSequence,Set<Gene>> cs2gene, OutputStream stream)	Write a MEX matrix as a TAR archive to the given output stream.
int	MexMatrixWriter.write(SingleCellExpressionDataMatrix<?> matrix, Map<CompositeSequence,Set<Gene>> cs2gene, Path outputDir)	Write a matrix to a directory.
default int	SingleCellExpressionDataMatrixWriter.write(SingleCellExpressionDataMatrix<?> matrix, OutputStream stream)
int	SingleCellExpressionDataMatrixWriter.write(SingleCellExpressionDataMatrix<?> matrix, Writer writer)
int	TabularMatrixWriter.write(SingleCellExpressionDataMatrix<?> matrix, Writer writer)
int	TabularMatrixWriter.write(SingleCellExpressionDataMatrix<?> matrix, Map<CompositeSequence,Set<Gene>> cs2gene, Writer writer)

Uses of SingleCellExpressionDataMatrix in ubic.gemma.persistence.service.expression.experiment

Methods in ubic.gemma.persistence.service.expression.experiment that return SingleCellExpressionDataMatrix

Modifier and Type	Method	Description
SingleCellExpressionDataMatrix<?>	SingleCellExpressionExperimentService.getSingleCellExpressionDataMatrix(ExpressionExperiment expressionExperiment, List<BioAssay> samples, QuantitationType quantitationType)	Obtain a single-cell expression data matrix for the given quantitation type.
SingleCellExpressionDataMatrix<?>	SingleCellExpressionExperimentService.getSingleCellExpressionDataMatrix(ExpressionExperiment expressionExperiment, QuantitationType quantitationType)	Obtain a single-cell expression data matrix for the given quantitation type.
SingleCellExpressionDataMatrix<?>	SingleCellExpressionExperimentServiceImpl.getSingleCellExpressionDataMatrix(ExpressionExperiment expressionExperiment, List<BioAssay> samples, QuantitationType quantitationType)
SingleCellExpressionDataMatrix<?>	SingleCellExpressionExperimentServiceImpl.getSingleCellExpressionDataMatrix(ExpressionExperiment expressionExperiment, QuantitationType quantitationType)