Uses of Interface
ubic.gemma.core.datastructure.matrix.ExpressionDataMatrix

Packages that use ExpressionDataMatrix

Package	Description
ubic.gemma.core.analysis.preprocess.detect	This package contains classes for detecting and linting expression data.
ubic.gemma.core.datastructure.matrix	This package contains data structures for representing matrices of gene expression.
ubic.gemma.core.datastructure.matrix.io	This package contains I/O utilities for reading and writing expression data matrices.

Uses of ExpressionDataMatrix in ubic.gemma.core.analysis.preprocess.detect

Methods in ubic.gemma.core.analysis.preprocess.detect with parameters of type ExpressionDataMatrix

Modifier and Type	Method	Description
static QuantitationTypeDetectionUtils.InferredQuantitationType	QuantitationTypeDetectionUtils.infer(ExpressionDataMatrix<?> expressionData, QuantitationType qt)
static QuantitationType	QuantitationTypeDetectionUtils.inferQuantitationType(ExpressionDataMatrix<?> expressionDataDoubleMatrix)	Infer a QuantitationType from expression data.

Uses of ExpressionDataMatrix in ubic.gemma.core.datastructure.matrix

Subinterfaces of ExpressionDataMatrix in ubic.gemma.core.datastructure.matrix

Modifier and Type	Interface	Description
interface	BulkExpressionDataMatrix<T>	Interface for bulk expression data matrices.
interface	ExpressionDataPrimitiveDoubleMatrix	Interface for matrices that can provide unboxed doubles.
interface	ExpressionDataPrimitiveIntMatrix
interface	SingleCellExpressionDataMatrix<T>	In a single-cell expression data matrix, each column represents a cell.

Classes in ubic.gemma.core.datastructure.matrix that implement ExpressionDataMatrix

Modifier and Type	Class	Description
class	BaseExpressionDataMatrix<T>	Base class for ExpressionDataMatrix implementations.
class	EmptyExpressionMatrix	Used to make a 'dummy matrix' that has the column information populated.
class	ExpressionDataBooleanMatrix	Matrix of booleans mapped from an ExpressionExperiment.
class	ExpressionDataDoubleMatrix	A data structure that holds a reference to the data for a given expression experiment.
class	ExpressionDataIntegerMatrix	Warning, not fully tested.
class	ExpressionDataStringMatrix
class	SingleCellExpressionDataDoubleMatrix
class	SingleCellExpressionDataIntMatrix

Constructors in ubic.gemma.core.datastructure.matrix with parameters of type ExpressionDataMatrix

Constructor	Description
ExpressionDataMatrixRowElement(ExpressionDataMatrix<?> matrix, int i)

Uses of ExpressionDataMatrix in ubic.gemma.core.datastructure.matrix.io

Methods in ubic.gemma.core.datastructure.matrix.io with parameters of type ExpressionDataMatrix

Modifier and Type	Method	Description
default int	BulkExpressionDataMatrixWriter.write(ExpressionDataMatrix<?> matrix, OutputStream stream)
default int	BulkExpressionDataMatrixWriter.write(ExpressionDataMatrix<?> matrix, Writer writer)
default int	ExpressionDataMatrixWriter.write(ExpressionDataMatrix<?> matrix, OutputStream stream)
int	ExpressionDataMatrixWriter.write(ExpressionDataMatrix<?> matrix, Writer writer)
default int	SingleCellExpressionDataMatrixWriter.write(ExpressionDataMatrix<?> matrix, OutputStream stream)
default int	SingleCellExpressionDataMatrixWriter.write(ExpressionDataMatrix<?> matrix, Writer writer)