Package ubic.gemma.core.analysis.preprocess.svd

package ubic.gemma.core.analysis.preprocess.svd
  • Class
    Description
    ExpressionDataSVD
    Perform SVD on an expression data matrix, E = U S V'.
    SVDException
    Exception raised when the SVD of a given expression data matrix cannot be computed.
    SVDResult
    Store information about SVD of expression data and comparisons to factors/batch information.
    SVDService
    Performs Singular value decomposition on experiment data to get eigengenes, and does comparison of those PCs to factors recorded in the experimental design.
    SVDServiceImpl
    Perform SVD on expression data and store the results.