Uses of Package
ubic.gemma.core.analysis.preprocess.svd

Packages that use ubic.gemma.core.analysis.preprocess.svd

Package	Description
ubic.gemma.apps	This package contains built-in Gemma CLI applications.
ubic.gemma.core.analysis.preprocess	This package contains classes for preprocessing expression data.
ubic.gemma.core.analysis.preprocess.svd
ubic.gemma.core.tasks.analysis.expression
ubic.gemma.rest

Classes in ubic.gemma.core.analysis.preprocess.svd used by ubic.gemma.apps

Class	Description
SVDException	Exception raised when the SVD of a given expression data matrix cannot be computed.

Classes in ubic.gemma.core.analysis.preprocess.svd used by ubic.gemma.core.analysis.preprocess

Class	Description
SVDException	Exception raised when the SVD of a given expression data matrix cannot be computed.

Classes in ubic.gemma.core.analysis.preprocess.svd used by ubic.gemma.core.analysis.preprocess.svd

Class	Description
SVDException	Exception raised when the SVD of a given expression data matrix cannot be computed.
SVDResult	Store information about SVD of expression data and comparisons to factors/batch information.
SVDService	Performs Singular value decomposition on experiment data to get eigengenes, and does comparison of those PCs to factors recorded in the experimental design.

Classes in ubic.gemma.core.analysis.preprocess.svd used by ubic.gemma.core.tasks.analysis.expression

Class	Description
SVDException	Exception raised when the SVD of a given expression data matrix cannot be computed.

Classes in ubic.gemma.core.analysis.preprocess.svd used by ubic.gemma.rest

Class	Description
SVDResult	Store information about SVD of expression data and comparisons to factors/batch information.