Interface BulkExpressionDataPrimitiveDoubleMatrix

All Superinterfaces:

BulkExpressionDataMatrix<Double>, ExpressionDataMatrix<Double>, ExpressionDataPrimitiveDoubleMatrix

All Known Implementing Classes:

BulkExpressionDataDoubleMatrix, ExpressionDataDoubleMatrix

public interface BulkExpressionDataPrimitiveDoubleMatrix
extends BulkExpressionDataMatrix<Double>, ExpressionDataPrimitiveDoubleMatrix

Interface for bulk expression data matrices that can be efficiently accessed as a primitive double matrix.

Author:

poirigui

Method Summary

Modifier and Type	Method	Description
double[]	getColumnAsDoubles(BioAssay bioAssay)	Retrieve the given column without boxing, or null if the assay is not part of this matrix.
double[][]	getRawMatrixAsDoubles()	Obtain the raw matrix as a double array.

Methods inherited from interface BulkExpressionDataMatrix

get, getBioAssayDimension, getBioAssayForColumn, getBioMaterialForColumn, getBioMaterials, getColumn, getColumnIndex, getColumnIndex, getRawMatrix, hasMissingValues, sliceColumns, sliceColumns

Methods inherited from interface ExpressionDataMatrix

columns, get, getColumn, getDesignElementForRow, getDesignElements, getExpressionExperiment, getQuantitationType, getRow, getRow, getRowElement, getRowElements, getRowIndex, getRowIndices, rows, sliceRows

Methods inherited from interface ExpressionDataPrimitiveDoubleMatrix

getAsDouble, getColumnAsDoubles, getRowAsDoubles, getRowAsDoubles

Method Details

getColumnAsDoubles

@Nullable
double[] getColumnAsDoubles(BioAssay bioAssay)

Retrieve the given column without boxing, or null if the assay is not part of this matrix.

See Also:

• BulkExpressionDataMatrix.getColumn(BioAssay)

getRawMatrixAsDoubles

double[][] getRawMatrixAsDoubles()

Obtain the raw matrix as a double array.

See Also:

• BulkExpressionDataMatrix.getRawMatrix()