Package ubic.gemma.core.datastructure.matrix

Interface BulkExpressionDataPrimitiveIntMatrix

All Superinterfaces:

BulkExpressionDataMatrix<Integer>, ExpressionDataMatrix<Integer>, ExpressionDataPrimitiveIntMatrix

All Known Implementing Classes:

BulkExpressionDataIntMatrix

public interface BulkExpressionDataPrimitiveIntMatrix
extends BulkExpressionDataMatrix<Integer>, ExpressionDataPrimitiveIntMatrix

Interface for bulk expression data matrices that can be efficiently accessed as a primitive int matrix.

Author:

poirigui

Method Summary

Modifier and Type	Method	Description
int[]	getColumnAsInts(BioAssay bioAssay)	Retrieve the given column without boxing.
int[][]	getRawMatrixAsInts()	Obtain the raw matrix as a int array.

Methods inherited from interface ubic.gemma.core.datastructure.matrix.BulkExpressionDataMatrix

get, getBioAssayDimension, getBioAssayForColumn, getBioMaterialForColumn, getColumn, getColumnIndex, getColumnIndex, getRawMatrix, hasMissingValues

Methods inherited from interface ubic.gemma.core.datastructure.matrix.ExpressionDataMatrix

columns, get, getColumn, getDesignElementForRow, getDesignElements, getExpressionExperiment, getQuantitationType, getRow, getRow, getRowElement, getRowElements, getRowIndex, getRowIndices, rows, sliceRows

Methods inherited from interface ubic.gemma.core.datastructure.matrix.ExpressionDataPrimitiveIntMatrix

getAsInt, getColumnAsInts, getRowAsInts, getRowAsInts

Method Details

getColumnAsInts

@Nullable
int[] getColumnAsInts(BioAssay bioAssay)

Retrieve the given column without boxing.

See Also:

• ExpressionDataMatrix.getColumn(int)

getRawMatrixAsInts

int[][] getRawMatrixAsInts()

Obtain the raw matrix as a int array.

See Also:

• BulkExpressionDataMatrix.getRawMatrix()