Package ubic.gemma.core.datastructure.matrix

Class ExperimentalDesignWriter

java.lang.Object

ubic.gemma.core.datastructure.matrix.ExperimentalDesignWriter

public class ExperimentalDesignWriter
extends Object

Output compatible with ExperimentalDesignImporterImpl.

Author:

keshav

See Also:

ExperimentalDesignImporterImpl

Constructor Summary

Constructors

Constructor	Description
ExperimentalDesignWriter()

Method Summary

Modifier and Type	Method	Description
void	write(Writer writer, ExpressionExperiment ee, boolean writeHeader)
void	write(Writer writer, ExpressionExperiment ee, Collection<BioAssay> bioAssays, boolean writeBaseHeader, boolean writeHeader)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExperimentalDesignWriter

public ExperimentalDesignWriter()

Method Detail

write

public void write(Writer writer,
                  ExpressionExperiment ee,
                  boolean writeHeader)
           throws IOException

Parameters:

writer - writer

ee - ee

writeHeader - writer header

Throws:

IOException - when the write failed

write

public void write(Writer writer,
                  ExpressionExperiment ee,
                  Collection<BioAssay> bioAssays,
                  boolean writeBaseHeader,
                  boolean writeHeader)
           throws IOException

Parameters:

writeBaseHeader - comments

writeHeader - column names

ee - ee

bioAssays - bas

writer - writer

Throws:

IOException - when the write failed