Uses of Class
ubic.gemma.core.datastructure.matrix.QuantitationMismatchException

Packages that use QuantitationMismatchException

Package	Description
ubic.gemma.core.analysis.preprocess
ubic.gemma.core.datastructure.matrix
ubic.gemma.persistence.service.expression.bioAssayData

Uses of QuantitationMismatchException in ubic.gemma.core.analysis.preprocess

Methods in ubic.gemma.core.analysis.preprocess that return QuantitationMismatchException

Modifier and Type	Method	Description
QuantitationMismatchException	QuantitationMismatchPreprocessingException.getCause()

Constructors in ubic.gemma.core.analysis.preprocess with parameters of type QuantitationMismatchException

Constructor	Description
QuantitationMismatchPreprocessingException(ExpressionExperiment ee, QuantitationMismatchException cause)

Uses of QuantitationMismatchException in ubic.gemma.core.datastructure.matrix

Subclasses of QuantitationMismatchException in ubic.gemma.core.datastructure.matrix

Modifier and Type	Class	Description
class	InferredQuantitationMismatchException	Exception raised when the quantitation of an ExpressionDataMatrix does not agree with the one inferred.
class	SuspiciousValuesForQuantitationException	Exception raised when suspicious values are detected in an ExpressionDataMatrix.

Methods in ubic.gemma.core.datastructure.matrix that throw QuantitationMismatchException

Modifier and Type	Method	Description
static ExpressionDataDoubleMatrix	ExpressionDataDoubleMatrixUtil.ensureLog2Scale(ExpressionDataDoubleMatrix dmatrix, boolean ignoreQuantitationMismatch)	Ensures that the given matrix is on a Log2 scale.

Uses of QuantitationMismatchException in ubic.gemma.persistence.service.expression.bioAssayData

Methods in ubic.gemma.persistence.service.expression.bioAssayData that throw QuantitationMismatchException

Modifier and Type	Method	Description
int	ProcessedExpressionDataVectorService.computeProcessedExpressionData(ExpressionExperiment ee, boolean ignoreQuantitationMismatch)	Create processed vectors and update ranks.
int	ProcessedExpressionDataVectorServiceImpl.computeProcessedExpressionData(ExpressionExperiment ee, boolean ignoreQuantitationMismatch)
int	ProcessedExpressionDataVectorDao.createProcessedDataVectors(ExpressionExperiment expressionExperiment, boolean ignoreQuantitationMismatch)	Populate the processed data for the given experiment.
int	ProcessedExpressionDataVectorDaoImpl.createProcessedDataVectors(ExpressionExperiment expressionExperiment, boolean ignoreQuantitationMismatch)
int	ProcessedExpressionDataVectorService.createProcessedDataVectors(ExpressionExperiment expressionExperiment, boolean ignoreQuantitationMismatch)
int	ProcessedExpressionDataVectorServiceImpl.createProcessedDataVectors(ExpressionExperiment expressionExperiment, boolean ignoreQuantitationMismatch)