Package ubic.gemma.core.genome.gene

Class PhenotypeGroupValueObject

java.lang.Object

ubic.gemma.model.IdentifiableValueObject<GeneSet>

ubic.gemma.model.genome.gene.GeneSetValueObject

ubic.gemma.core.genome.gene.SessionBoundGeneSetValueObject

ubic.gemma.core.genome.gene.PhenotypeGroupValueObject

All Implemented Interfaces:

gemma.gsec.model.Securable, gemma.gsec.model.SecureValueObject, Serializable, Identifiable, GemmaSessionBackedValueObject

public class PhenotypeGroupValueObject
extends SessionBoundGeneSetValueObject

Author:

tvrossum

See Also:

Serialized Form

Field Summary

Fields inherited from class ubic.gemma.model.IdentifiableValueObject

id

Constructor Summary

Constructors

Constructor	Description
PhenotypeGroupValueObject()
PhenotypeGroupValueObject(String name, String description, Long taxonId, String taxonName, Collection<Long> memberIds, String phenotypeName, String phenotypeCategory, String searchTerm)	Method to create a display object from scratch

Method Summary

Modifier and Type	Method	Description
static PhenotypeGroupValueObject	convertFromGeneSetValueObject(GeneSetValueObject gsvo, String searchTerm)
boolean	equals(Object obj)
String	getPhenotypeCategory()
String	getPhenotypeName()
String	getSearchTerm()
int	hashCode()
void	setPhenotypeCategory(String phenotypeCategory)
void	setPhenotypeName(String phenotypeName)
void	setSearchTerm(String searchTerm)

Methods inherited from class ubic.gemma.core.genome.gene.SessionBoundGeneSetValueObject

isModified, setModified

Methods inherited from class ubic.gemma.model.genome.gene.GeneSetValueObject

getCurrentUserIsOwner, getIsPublic, getIsShared, getSecurableClass, getSize, getTaxonId, getTaxonName, getUserCanWrite, getUserOwned, setIsPublic, setIsShared, setSize, setUserCanWrite, toString

Methods inherited from class ubic.gemma.model.IdentifiableValueObject

getId, setId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.model.GemmaSessionBackedValueObject

getId, setId

Methods inherited from interface gemma.gsec.model.Securable

getId

Methods inherited from interface gemma.gsec.model.SecureValueObject

setUserOwned

Constructor Detail

PhenotypeGroupValueObject

public PhenotypeGroupValueObject()

PhenotypeGroupValueObject

public PhenotypeGroupValueObject(String name,
                                 String description,
                                 Long taxonId,
                                 String taxonName,
                                 @Nullable
                                 Collection<Long> memberIds,
                                 String phenotypeName,
                                 String phenotypeCategory,
                                 String searchTerm)

Method to create a display object from scratch

Parameters:

name - cannot be null

description - should not be null

taxonId - can be null

taxonName - can be null

memberIds - can be null; for a gene this is a collection just containing their id

searchTerm - search term

phenotypeCategory - phenotype category

phenotypeName - phenotype name

Method Detail

convertFromGeneSetValueObject

public static PhenotypeGroupValueObject convertFromGeneSetValueObject(GeneSetValueObject gsvo,
                                                                      String searchTerm)

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

getPhenotypeCategory

public String getPhenotypeCategory()

setPhenotypeCategory

public void setPhenotypeCategory(String phenotypeCategory)

getPhenotypeName

public String getPhenotypeName()

setPhenotypeName

public void setPhenotypeName(String phenotypeName)

getSearchTerm

public String getSearchTerm()

setSearchTerm

public void setSearchTerm(String searchTerm)