Class BrainKeywordMatcher

java.lang.Object

ubic.gemma.core.geoscrape.BrainKeywordMatcher

All Implemented Interfaces:

GeoRecordMatcher

@Component
public class BrainKeywordMatcher
extends Object
implements GeoRecordMatcher

Cheesy v1 brain-related keyword matcher. Cross-checks the curated keyword set against title / summary / sample details / MeSH headings.

If the supplied UberonOntologyService is loaded at first evaluation, descendant term labels of UBERON:0000955 (brain) are folded into the keyword set. Otherwise the curated set alone is used — Uberon isn't loaded in unit-test contexts.

v2 will replace this with a curation-agent pass + gene-set-fetch skill output; see GeoRecordMatcher javadoc.

Nested Class Summary

Nested classes/interfaces inherited from interface GeoRecordMatcher

GeoRecordMatcher.MatchResult

Constructor Summary

Constructors

Constructor	Description
BrainKeywordMatcher()	Test seam: no-arg constructor uses the curated set only.
BrainKeywordMatcher(UberonOntologyService uberon)

Method Summary

Modifier and Type	Method	Description
GeoRecordMatcher.MatchResult	evaluate(GeoRecord r)	Decide whether this matcher flags the given record.
String	name()	Short, stable identifier — surfaces in REST request bodies (the criteria selector), the watermark's criteriaApplied column, and the preboarded's matchedCriteria JSON.

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

BrainKeywordMatcher

@Autowired
public BrainKeywordMatcher(@Nullable
 UberonOntologyService uberon)

BrainKeywordMatcher

public BrainKeywordMatcher()

Test seam: no-arg constructor uses the curated set only.

Method Details

name

public String name()

Description copied from interface: GeoRecordMatcher

Short, stable identifier — surfaces in REST request bodies (the criteria selector), the watermark's criteriaApplied column, and the preboarded's matchedCriteria JSON. Lowercase, no whitespace (e.g. "brain", "tfperturb").

Specified by:

name in interface GeoRecordMatcher

evaluate

public GeoRecordMatcher.MatchResult evaluate(GeoRecord r)

Description copied from interface: GeoRecordMatcher

Decide whether this matcher flags the given record.

Specified by:

evaluate in interface GeoRecordMatcher