AffyPowerToolsProbesetSummarize (Gemma 1.31.4 API)

java.lang.Object
- ubic.gemma.core.loader.expression.AffyPowerToolsProbesetSummarize

public class AffyPowerToolsProbesetSummarize
extends Object

Author:: paul

Field Summary

Fields
Modifier and Type	Field	Description
`protected static String`	`GEO_CEL_FILE_NAME_REGEX`	Look for patterns like GSM476194_SK_09-BALBcJ_622.CEL or GSM289913.CEL.gz or GSM1525415_C1.cel.gz and not GSM12343.EXP.gz

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected Map<String,Map<String,String>>`	`loadMpsNames()`
`static BioAssay`	`matchBioAssayToCelFileName(Map<String,BioAssay> bmap, String fileName)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - GEO_CEL_FILE_NAME_REGEX
```
protected static final String GEO_CEL_FILE_NAME_REGEX
```
    Look for patterns like GSM476194_SK_09-BALBcJ_622.CEL or GSM289913.CEL.gz or GSM1525415_C1.cel.gz and not GSM12343.EXP.gz
    
    See Also:
    
    Constant Field Values
- Method Detail
  - matchBioAssayToCelFileName
```
public static BioAssay matchBioAssayToCelFileName(Map<String,BioAssay> bmap,
                                                  String fileName)
```
    Parameters:
    
    bmap - bMap
    
    fileName - file name
    
    Returns:
    
    BioAssay, or null if not found.
  - loadMpsNames
```
protected Map<String,Map<String,String>> loadMpsNames()
```
    Returns:
    
    Map of GPLXXXX to {mps, pgc, qcc, clf} to file name