Package ubic.gemma.core.loader.expression.arrayDesign

Class ArrayDesignMergeServiceImpl

java.lang.Object

ubic.gemma.core.loader.expression.arrayDesign.ArrayDesignMergeServiceImpl

All Implemented Interfaces:

ArrayDesignMergeService

@Component
public class ArrayDesignMergeServiceImpl
extends Object
implements ArrayDesignMergeService

Author:

paul

Constructor Summary

Constructors

Constructor	Description
ArrayDesignMergeServiceImpl(ArrayDesignService arrayDesignService, ArrayDesignReportService arrayDesignReportService, ArrayDesignMergeHelperService mergeServiceHelper)

Method Summary

Modifier and Type	Method	Description
ArrayDesign	merge(ArrayDesign arrayDesign, Collection<ArrayDesign> otherArrayDesigns, String nameOfNewDesign, String shortNameOfNewDesign, boolean add)	Merge array designs based on their sequence content.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ArrayDesignMergeServiceImpl

@Autowired
public ArrayDesignMergeServiceImpl(ArrayDesignService arrayDesignService,
 ArrayDesignReportService arrayDesignReportService,
 ArrayDesignMergeHelperService mergeServiceHelper)

Method Details

merge

public ArrayDesign merge(ArrayDesign arrayDesign,
 Collection<ArrayDesign> otherArrayDesigns,
 String nameOfNewDesign,
 String shortNameOfNewDesign,
 boolean add)

Description copied from interface: ArrayDesignMergeService

Merge array designs based on their sequence content. Array designs that are already merged cannot be merged, but new array designs can be added into an existing merged design. Also array designs can only be merged once: a given array design cannot be merged twice.

Specified by:

merge in interface ArrayDesignMergeService

Parameters:

arrayDesign - , used as a "top level" design when 'add' is true; otherwise just treated as one of the designs to be merged into a new design.

otherArrayDesigns - array designs to merge with the arrayDesign

nameOfNewDesign - can be null if "add" is true (ignored)

shortNameOfNewDesign - can be null if "add" is true (ignored)

add - if "arrayDesign" is already merged, add the "otherArrayDesign"s to it. Otherwise force the creation of a new design.

Returns:

the merged design. If add=true, then this will be "arrayDesign". Otherwise it will be a new array design.