AffyChipTypeExtractor |
Extract the chip type from Affymetrix CEL files.
|
AffyProbeReader |
Reads Affymetrix Probe files, including exon arrays.
|
ArrayDesignMergeHelperServiceImpl |
|
ArrayDesignMergeServiceImpl |
|
ArrayDesignParser |
Deprecated. |
ArrayDesignProbeMapperServiceImpl |
For an array design, generate gene product mappings for the sequences.
|
ArrayDesignSequenceAlignmentServiceImpl |
Aligns sequences from array designs to the genome, using blat, and persists the blat results.
|
ArrayDesignSequenceProcessingServiceImpl |
Handles collapsing the sequences, attaching sequences to DesignElements, either from provided input or via a fetch.
|
CompositeSequenceParser |
Parse the "old" array description format.
|
IlluminaProbeReader |
Parse an Illumina "manifest.txt" file (tab-delimited).
|
Reporter |
A "probe" (Affymetrix); for other types of arrays, there is no practical distinction between compositesequences and
reporters, and all analysis would take place at the level of CompositeSequences.
|
Reporter.Factory |
|