Package ubic.gemma.core.loader.expression.arrayDesign

Class ArrayDesignParser

java.lang.Object

ubic.gemma.core.loader.util.parser.BasicLineParser<ArrayDesign>

ubic.gemma.core.loader.expression.arrayDesign.ArrayDesignParser

All Implemented Interfaces:

LineParser<ArrayDesign>, Parser<ArrayDesign>

@Deprecated
public class ArrayDesignParser
extends BasicLineParser<ArrayDesign>

Deprecated.

Parse ArrayDesigns from a flat file. This is used to seed the system from our legacy data. (probably not used) Format:

1. Murine Genome U74A Array --- platform name
2. Affymetrix -- Manufacturer name
3. MG-U74A --- short name
4. MOUSE --- taxon
5. 10044 --- advertised number of design elements
6. (Masked) Affymetrix GeneChip expression probe array... --- Description

Author:

keshav

Field Summary

Fields inherited from class ubic.gemma.core.loader.util.parser.BasicLineParser

log

Fields inherited from interface ubic.gemma.core.loader.util.parser.LineParser

MIN_PARSED_LINES_FOR_UPDATE, PARSE_ALERT_TIME_FREQUENCY_MS

Fields inherited from interface ubic.gemma.core.loader.util.parser.Parser

PARSE_ALERT_FREQUENCY

Constructor Summary

Constructors

Constructor	Description
ArrayDesignParser()	Deprecated.

Method Summary

Modifier and Type	Method	Description
protected void	addResult(ArrayDesign obj)	Deprecated.
Collection<ArrayDesign>	getResults()	Deprecated.
ArrayDesign	parseOneLine(String line)	Deprecated. Handle the parsing of a single line from the input.

Methods inherited from class ubic.gemma.core.loader.util.parser.BasicLineParser

parse, parse, parse

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.core.loader.util.parser.Parser

getUniqueResult

Constructor Details

ArrayDesignParser

public ArrayDesignParser()

Deprecated.

Method Details

getResults

public Collection<ArrayDesign> getResults()

Deprecated.

Specified by:

getResults in interface Parser<ArrayDesign>

Specified by:

getResults in class BasicLineParser<ArrayDesign>

Returns:

the results of the parse.

addResult

protected void addResult(ArrayDesign obj)

Deprecated.

Specified by:

addResult in class BasicLineParser<ArrayDesign>

parseOneLine

public ArrayDesign parseOneLine(String line)

Deprecated.

Description copied from interface: LineParser

Handle the parsing of a single line from the input.

Parameters:

line - line to parse

Returns:

parsed object