Package ubic.gemma.core.loader.util.parser

Interface LineParser<T>

All Superinterfaces:

Parser<T>

All Known Implementing Classes:

AffyProbeReader, ArrayDesignParser, BasicLineMapParser, BasicLineParser, BiomartEnsembleNcbiParser, BlatResultParser, CompositeSequenceParser, IlluminaProbeReader, LineMapParser, NcbiGene2AccessionParser, NCBIGene2GOAssociationParser, NcbiGeneEnsemblFileParser, NcbiGeneHistoryParser, NcbiGeneInfoParser, ProbeSequenceParser, TaxonParser

public interface LineParser<T>
extends Parser<T>

A Parser that processes its input line-by-line. One of the parse methods must be called before data becomes available.

Author:

pavlidis

Field Summary

Fields

Modifier and Type	Field	Description
static final int	MIN_PARSED_LINES_FOR_UPDATE
static final int	PARSE_ALERT_TIME_FREQUENCY_MS

Fields inherited from interface ubic.gemma.core.loader.util.parser.Parser

PARSE_ALERT_FREQUENCY

Method Summary

Modifier and Type	Method	Description
T	parseOneLine(String line)	Handle the parsing of a single line from the input.

Methods inherited from interface ubic.gemma.core.loader.util.parser.Parser

getResults, getUniqueResult, parse, parse, parse

Field Details

MIN_PARSED_LINES_FOR_UPDATE

static final int MIN_PARSED_LINES_FOR_UPDATE

See Also:

• Constant Field Values

PARSE_ALERT_TIME_FREQUENCY_MS

static final int PARSE_ALERT_TIME_FREQUENCY_MS

See Also:

• Constant Field Values

Method Details

parseOneLine

T parseOneLine(String line)

Handle the parsing of a single line from the input.

Parameters:

line - line to parse

Returns:

parsed object