Package ubic.gemma.core.loader.util.parser

Class BasicLineParser<T>

java.lang.Object

ubic.gemma.core.loader.util.parser.BasicLineParser<T>

All Implemented Interfaces:

LineParser<T>, Parser<T>

Direct Known Subclasses:

ArrayDesignParser, BlatResultParser, CompositeSequenceParser, NcbiGene2AccessionParser, NCBIGene2GOAssociationParser

public abstract class BasicLineParser<T>
extends Object
implements LineParser<T>

A simple LineParser implementation that doesn't do anything. Subclass this and implement the "parseOneLine" method.

Author:

pavlidis

Field Summary

Fields

Modifier and Type	Field	Description
protected final org.apache.commons.logging.Log	log

Fields inherited from interface ubic.gemma.core.loader.util.parser.LineParser

MIN_PARSED_LINES_FOR_UPDATE, PARSE_ALERT_TIME_FREQUENCY_MS

Fields inherited from interface ubic.gemma.core.loader.util.parser.Parser

PARSE_ALERT_FREQUENCY

Constructor Summary

Constructors

Constructor	Description
BasicLineParser()

Method Summary

Modifier and Type	Method	Description
protected abstract void	addResult(T obj)
abstract Collection<T>	getResults()
void	parse(File file)	Parse a File
void	parse(InputStream is)	Parse a InputStream.
void	parse(String filename)	Parse a file identified by its path.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.core.loader.util.parser.LineParser

parseOneLine

Methods inherited from interface ubic.gemma.core.loader.util.parser.Parser

getUniqueResult

Field Details

log

protected final org.apache.commons.logging.Log log

Constructor Details

BasicLineParser

public BasicLineParser()

Method Details

getResults

public abstract Collection<T> getResults()

Specified by:

getResults in interface Parser<T>

Returns:

the results of the parse.

parse

public void parse(File file)
           throws IOException

Description copied from interface: Parser

Parse a File

Specified by:

parse in interface Parser<T>

Parameters:

file - file

Throws:

IOException - if there is a problem while manipulating the file

parse

public void parse(InputStream is)
           throws IOException

Description copied from interface: Parser

Parse a InputStream.

Specified by:

parse in interface Parser<T>

Parameters:

is - input stream

Throws:

IOException - if there is a problem while manipulating the file

parse

public void parse(String filename)
           throws IOException

Description copied from interface: Parser

Parse a file identified by its path.

Specified by:

parse in interface Parser<T>

Parameters:

filename - Absolute path to the file

Throws:

IOException - if there is a problem while manipulating the file

addResult

protected abstract void addResult(T obj)