Package ubic.gemma.core.loader.util.parser

Interface Parser<T>

All Known Subinterfaces:

LineParser<T>

All Known Implementing Classes:

AffyProbeReader, ArrayDesignParser, BasicLineMapParser, BasicLineParser, BiomartEnsembleNcbiParser, BlatResultParser, CompositeSequenceParser, FastaParser, GeoFamilyParser, IlluminaProbeReader, LineMapParser, NcbiGene2AccessionParser, NCBIGene2GOAssociationParser, NcbiGeneEnsemblFileParser, NcbiGeneHistoryParser, NcbiGeneInfoParser, ProbeSequenceParser, RecordParser, SwissProtParser, TaxonParser

public interface Parser<T>

Interface for classes that allow parsing of files and streams.

Author:

pavlidis

Field Summary

Fields

Modifier and Type	Field	Description
static final int	PARSE_ALERT_FREQUENCY

Method Summary

Modifier and Type	Method	Description
Collection<T>	getResults()
default T	getUniqueResult()	Obtain a unique result from the parser.
void	parse(File f)	Parse a File
void	parse(InputStream is)	Parse a InputStream.
void	parse(String filename)	Parse a file identified by its path.

Field Details

PARSE_ALERT_FREQUENCY

static final int PARSE_ALERT_FREQUENCY

See Also:

• Constant Field Values

Method Details

getResults

Collection<T> getResults()

Returns:

the results of the parse.

getUniqueResult

@Nullable
default T getUniqueResult()
                   throws IllegalStateException

Obtain a unique result from the parser.

Throws:

IllegalStateException - if there is more than one parse result

parse

void parse(File f)
    throws IOException

Parse a File

Parameters:

f - file

Throws:

IOException - if there is a problem while manipulating the file

parse

void parse(InputStream is)
    throws IOException

Parse a InputStream.

Parameters:

is - input stream

Throws:

IOException - if there is a problem while manipulating the file

parse

void parse(String filename)
    throws IOException

Parse a file identified by its path.

Parameters:

filename - Absolute path to the file

Throws:

IOException - if there is a problem while manipulating the file