Package ubic.gemma.core.loader.util.parser

Class LineMapParser<K,T>

java.lang.Object

ubic.gemma.core.loader.util.parser.BasicLineMapParser<K,T>

ubic.gemma.core.loader.util.parser.LineMapParser<K,T>

All Implemented Interfaces:

LineParser<T>, Parser<T>

Direct Known Subclasses:

BiomartEnsembleNcbiParser

public abstract class LineMapParser<K,T>
extends BasicLineMapParser<K,T>

The difference between this class and BasicLineMapParser is more flexibility in how keys are provided. The parseOneLine method that is implemented must handle adding the data to the Map.

Author:

pavlidis

Field Summary

Fields inherited from class ubic.gemma.core.loader.util.parser.BasicLineMapParser

COMMENT_MARK, log

Fields inherited from interface ubic.gemma.core.loader.util.parser.LineParser

MIN_PARSED_LINES_FOR_UPDATE, PARSE_ALERT_TIME_FREQUENCY_MS

Fields inherited from interface ubic.gemma.core.loader.util.parser.Parser

PARSE_ALERT_FREQUENCY

Constructor Summary

Constructors

Constructor	Description
LineMapParser()

Method Summary

Modifier and Type	Method	Description
final K	getKey(T o)
void	parse(InputStream is)	Parse a InputStream.
protected final void	put(K key, T value)

Methods inherited from class ubic.gemma.core.loader.util.parser.BasicLineMapParser

containsKey, get, getKeySet, getResults, parse, parse, parseOneLine

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.core.loader.util.parser.Parser

getUniqueResult

Constructor Details

LineMapParser

public LineMapParser()

Method Details

parse

public void parse(InputStream is)
           throws IOException

Description copied from interface: Parser

Parse a InputStream.

Specified by:

parse in interface Parser<K>

Overrides:

parse in class BasicLineMapParser<K,T>

Parameters:

is - input stream

Throws:

IOException - if there is a problem while manipulating the file

getKey

public final K getKey(T o)

Specified by:

getKey in class BasicLineMapParser<K,T>

put

protected final void put(K key,
 T value)

Specified by:

put in class BasicLineMapParser<K,T>