Package ubic.gemma.core.loader.genome.gene.ncbi

Class NcbiGeneEnsemblFileParser

java.lang.Object

ubic.gemma.core.loader.util.parser.BasicLineMapParser<String,String>

ubic.gemma.core.loader.genome.gene.ncbi.NcbiGeneEnsemblFileParser

All Implemented Interfaces:

LineParser<String>, Parser<String>

public class NcbiGeneEnsemblFileParser
extends BasicLineMapParser<String,String>

Author:

paul

Field Summary

Fields inherited from class ubic.gemma.core.loader.util.parser.BasicLineMapParser

COMMENT_MARK, log

Fields inherited from interface ubic.gemma.core.loader.util.parser.LineParser

MIN_PARSED_LINES_FOR_UPDATE, PARSE_ALERT_TIME_FREQUENCY_MS

Fields inherited from interface ubic.gemma.core.loader.util.parser.Parser

PARSE_ALERT_FREQUENCY

Constructor Summary

Constructors

Constructor	Description
NcbiGeneEnsemblFileParser()

Method Summary

Modifier and Type	Method	Description
boolean	containsKey(String key)
String	get(String key)
protected String	getKey(String newItem)
Collection<String>	getKeySet()
Collection<String>	getResults()
String	parseOneLine(String line)	Handle the parsing of a single line from the input.
protected void	put(String key, String value)

Methods inherited from class ubic.gemma.core.loader.util.parser.BasicLineMapParser

parse, parse, parse

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.core.loader.util.parser.Parser

getUniqueResult

Constructor Details

NcbiGeneEnsemblFileParser

public NcbiGeneEnsemblFileParser()

Method Details

containsKey

public boolean containsKey(String key)

Specified by:

containsKey in class BasicLineMapParser<String,String>

get

public String get(String key)

Specified by:

get in class BasicLineMapParser<String,String>

getKeySet

public Collection<String> getKeySet()

Specified by:

getKeySet in class BasicLineMapParser<String,String>

getResults

public Collection<String> getResults()

Specified by:

getResults in interface Parser<String>

Specified by:

getResults in class BasicLineMapParser<String,String>

Returns:

the results of the parse.

parseOneLine

public String parseOneLine(String line)

Description copied from interface: LineParser

Handle the parsing of a single line from the input.

Specified by:

parseOneLine in interface LineParser<String>

Specified by:

parseOneLine in class BasicLineMapParser<String,String>

Parameters:

line - line to parse

Returns:

parsed object

getKey

protected String getKey(String newItem)

Specified by:

getKey in class BasicLineMapParser<String,String>

put

protected void put(String key,
 String value)

Specified by:

put in class BasicLineMapParser<String,String>