Class SwissProtParser
- java.lang.Object
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- ubic.gemma.core.loader.util.parser.RecordParser<Object>
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- ubic.gemma.core.loader.genome.gene.SwissProtParser
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public class SwissProtParser extends RecordParser<Object>
This does a very minimal parse of Swissprot records, just to get mRNAs associated with a single protein.- Author:
- pavlidis
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Field Summary
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Fields inherited from class ubic.gemma.core.loader.util.parser.RecordParser
log
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Fields inherited from interface ubic.gemma.core.loader.util.parser.Parser
PARSE_ALERT_FREQUENCY
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Constructor Summary
Constructors Constructor Description SwissProtParser()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description protected void
addResult(Object obj)
Add an object to the results collection.Collection<Object>
getResults()
Object
parseOneRecord(String record)
Handle the parsing of a single record from the input.-
Methods inherited from class ubic.gemma.core.loader.util.parser.RecordParser
parse, parse, parse, setRecordSeparator
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Method Detail
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getResults
public Collection<Object> getResults()
- Specified by:
getResults
in interfaceParser<Object>
- Specified by:
getResults
in classRecordParser<Object>
- Returns:
- the results of the parse.
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parseOneRecord
public Object parseOneRecord(String record)
Description copied from class:RecordParser
Handle the parsing of a single record from the input.- Specified by:
parseOneRecord
in classRecordParser<Object>
- Parameters:
record
- record- Returns:
- parsed object
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addResult
protected void addResult(Object obj)
Description copied from class:RecordParser
Add an object to the results collection.- Specified by:
addResult
in classRecordParser<Object>
- Parameters:
obj
- object
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