Package ubic.gemma.core.loader.genome.gene

Class SwissProtParser

java.lang.Object

ubic.gemma.core.loader.util.parser.RecordParser<Object>

ubic.gemma.core.loader.genome.gene.SwissProtParser

All Implemented Interfaces:

Parser<Object>

public class SwissProtParser
extends RecordParser<Object>

This does a very minimal parse of Swissprot records, just to get mRNAs associated with a single protein.

Author:

pavlidis

Field Summary

Fields inherited from class ubic.gemma.core.loader.util.parser.RecordParser

log

Fields inherited from interface ubic.gemma.core.loader.util.parser.Parser

PARSE_ALERT_FREQUENCY

Constructor Summary

Constructors

Constructor	Description
SwissProtParser()

Method Summary

Modifier and Type	Method	Description
protected void	addResult(Object obj)	Add an object to the results collection.
Collection<Object>	getResults()
Object	parseOneRecord(String record)	Handle the parsing of a single record from the input.

Methods inherited from class ubic.gemma.core.loader.util.parser.RecordParser

parse, parse, parse, setRecordSeparator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.core.loader.util.parser.Parser

getUniqueResult

Constructor Details

SwissProtParser

public SwissProtParser()

Method Details

getResults

public Collection<Object> getResults()

Specified by:

getResults in interface Parser<Object>

Specified by:

getResults in class RecordParser<Object>

Returns:

the results of the parse.

parseOneRecord

public Object parseOneRecord(String record)

Description copied from class: RecordParser

Handle the parsing of a single record from the input.

Specified by:

parseOneRecord in class RecordParser<Object>

Parameters:

record - record

Returns:

parsed object

addResult

protected void addResult(Object obj)

Description copied from class: RecordParser

Add an object to the results collection.

Specified by:

addResult in class RecordParser<Object>

Parameters:

obj - object