Class GeoFamilyParser
- java.lang.Object
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- ubic.gemma.core.loader.expression.geo.GeoFamilyParser
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Field Summary
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Fields inherited from interface ubic.gemma.core.loader.util.parser.Parser
PARSE_ALERT_FREQUENCY
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Constructor Summary
Constructors Constructor Description GeoFamilyParser()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description Collection<Object>
getResults()
void
parse(File f)
Parse aFile
void
parse(InputStream is)
Parse aInputStream
.void
parse(String fileName)
Parse a file identified by its path.void
sampleTypeSet(String accession, String string)
void
setProcessPlatformsOnly(boolean b)
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Method Detail
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getResults
public Collection<Object> getResults()
- Specified by:
getResults
in interfaceParser<Object>
- Returns:
- the results of the parse.
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parse
public void parse(File f) throws IOException
Description copied from interface:Parser
Parse aFile
- Specified by:
parse
in interfaceParser<Object>
- Parameters:
f
- file- Throws:
IOException
- if there is a problem while manipulating the file
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parse
public void parse(InputStream is) throws IOException
Description copied from interface:Parser
Parse aInputStream
.- Specified by:
parse
in interfaceParser<Object>
- Parameters:
is
- input stream- Throws:
IOException
- if there is a problem while manipulating the file
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parse
public void parse(String fileName) throws IOException
Description copied from interface:Parser
Parse a file identified by its path.- Specified by:
parse
in interfaceParser<Object>
- Parameters:
fileName
- Absolute path to the file- Throws:
IOException
- if there is a problem while manipulating the file
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setProcessPlatformsOnly
public void setProcessPlatformsOnly(boolean b)
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