Package ubic.gemma.core.loader.expression.geo

package ubic.gemma.core.loader.expression.geo

Related Packages

Package	Description
ubic.gemma.core.loader.expression	This package contains interfaces and classes for loading expression data.
ubic.gemma.core.loader.expression.geo.fetcher
ubic.gemma.core.loader.expression.geo.fetcher2	Provides classes for fetching data from various sources.
ubic.gemma.core.loader.expression.geo.model
ubic.gemma.core.loader.expression.geo.service
ubic.gemma.core.loader.expression.geo.singleCell	This package contains specific logic for dealing with single-cell data from GEO.
ubic.gemma.core.loader.expression.geo.util

Class	Description
DatasetCombiner	Class to handle cases where there are multiple GEO dataset for a single actual experiment.
GeoConverter
GeoConverterImpl	Convert GEO domain objects into Gemma objects.
GeoDomainObjectGenerator	Handle fetching and parsing GEO files.
GeoDomainObjectGeneratorLocal	GEO object generator that works on local files.
GeoFamilyParser	Class for parsing GSE and GDS files from NCBI GEO.
GeoLibrarySource
GeoParseResult	This simply holds the results obtained from parsing.
GeoSampleCorrespondence	Holds information about GEO samples that "go together" across datasets (GDS), because they came from the same sample (or so we infer)
GeoSampleType
QuantitationTypeParameterGuesser	Has the unpleasant task of figuring out what the quantitation type should look like, given a description and name string.