GeoSampleCorrespondence (Gemma 1.31.4 API)

java.lang.Object
- ubic.gemma.core.loader.expression.geo.GeoSampleCorrespondence

All Implemented Interfaces:

Serializable
```
public class GeoSampleCorrespondence
extends Object
implements Serializable
```
Holds information about GEO samples that "go together" across datasets (GDS), because they came from the same sample (or so we infer)

Author:

pavlidis

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor Description

GeoSampleCorrespondence()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`addCorrespondence(String gsmNumberA, String gsmNumberB)`
`GeoSampleCorrespondence`	`copy()`
`Collection<String>`	`getCorrespondingSamples(String gsmNumber)`
`Iterator<Set<String>>`	`iterator()`
`void`	`removeSample(String gsmNumber)`	Remove a sample from the maps
`void`	`setAccToDatasetOrPlatformMap(Map<String,String> accToDataset)`
`void`	`setAccToTitleMap(Map<String,String> accToTitle)`
`int`	`size()`
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - GeoSampleCorrespondence
```
public GeoSampleCorrespondence()
```
- Method Detail
  - addCorrespondence
```
public void addCorrespondence(String gsmNumberA,
                              String gsmNumberB)
```
    Parameters:
    
    gsmNumberA - number A
    
    gsmNumberB - If null, interpreted as meaning there is no correspondence to worry about, though they can be added later.
  - copy
```
public GeoSampleCorrespondence copy()
```
  - getCorrespondingSamples
```
public Collection<String> getCorrespondingSamples(String gsmNumber)
```
    Parameters:
    
    gsmNumber - gsm number
    
    Returns:
    
    Collection of sample accession values that correspond to the argument.
  - iterator
```
public Iterator<Set<String>> iterator()
```
  - removeSample
```
public void removeSample(String gsmNumber)
```
    Remove a sample from the maps
    
    Parameters:
    
    gsmNumber - gsm number
  - setAccToDatasetOrPlatformMap
```
public void setAccToDatasetOrPlatformMap(Map<String,String> accToDataset)
```
  - setAccToTitleMap
```
public void setAccToTitleMap(Map<String,String> accToTitle)
```
  - size
```
public int size()
```
    Returns:
    
    the number of sets (groups of matching samples)
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object