Package ubic.gemma.core.loader.expression.arrayDesign

Class ArrayDesignMergeHelperServiceImpl

java.lang.Object

ubic.gemma.core.loader.expression.arrayDesign.ArrayDesignMergeHelperServiceImpl

All Implemented Interfaces:

ArrayDesignMergeHelperService

@Service
public class ArrayDesignMergeHelperServiceImpl
extends Object
implements ArrayDesignMergeHelperService

Author:

Paul

Constructor Summary

Constructors

Constructor	Description
ArrayDesignMergeHelperServiceImpl()

Method Summary

Modifier and Type	Method	Description
ArrayDesign	persistMerging(ArrayDesign result, ArrayDesign arrayDesign, Collection<ArrayDesign> otherArrayDesigns, boolean mergeWithExisting, Collection<CompositeSequence> newProbes)	Finalize the assembly and persistence of the merged array design.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ArrayDesignMergeHelperServiceImpl

public ArrayDesignMergeHelperServiceImpl()

Method Detail

persistMerging

@Transactional
public ArrayDesign persistMerging(ArrayDesign result,
                                  ArrayDesign arrayDesign,
                                  Collection<ArrayDesign> otherArrayDesigns,
                                  boolean mergeWithExisting,
                                  Collection<CompositeSequence> newProbes)

Description copied from interface: ArrayDesignMergeHelperService

Finalize the assembly and persistence of the merged array design.

Specified by:

persistMerging in interface ArrayDesignMergeHelperService

Parameters:

result - the final merged design

arrayDesign - platform

otherArrayDesigns - other platform

mergeWithExisting - don't make a new array design, merge it into the one given as the first argument

newProbes - Probes that have to be added to make up the merged design. In the case of "mergeWithExisting", this might even be empty.

Returns:

the final persistent merged design