Reporter (Gemma 1.31.4 API)

java.lang.Object
- ubic.gemma.model.common.AbstractDescribable
- - ubic.gemma.core.loader.expression.arrayDesign.Reporter

All Implemented Interfaces:

Serializable, Describable, Identifiable
```
public class Reporter
extends AbstractDescribable
implements Serializable
```
A "probe" (Affymetrix); for other types of arrays, there is no practical distinction between compositesequences and reporters, and all analysis would take place at the level of CompositeSequences. For a brief time this was part of our core data model; but currently this is used only transiently during parsing etc. of Affymetrix platform sequence files.

See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type Class Description

static class Reporter.Factory

Constructor Summary

Constructors
Constructor Description

Reporter()
No-arg constructor added to satisfy javabean contract

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`Integer`	`getCol()`
`CompositeSequence`	`getCompositeSequence()`
`BioSequence`	`getImmobilizedCharacteristic()`
`Integer`	`getRow()`
`Long`	`getStartInBioChar()`
`String`	`getStrand()`
`void`	`setCol(Integer col)`
`void`	`setCompositeSequence(CompositeSequence compositeSequence)`
`void`	`setImmobilizedCharacteristic(BioSequence immobilizedCharacteristic)`
`void`	`setRow(Integer row)`
`void`	`setStartInBioChar(Long startInBioChar)`
`void`	`setStrand(String strand)`

Methods inherited from class ubic.gemma.model.common.AbstractDescribable
equals, getDescription, getId, getName, hashCode, setDescription, setId, setName, toString

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail
- Reporter
```
public Reporter()
```
  No-arg constructor added to satisfy javabean contract

Method Detail

getRow
```
public Integer getRow()
```

setRow
```
public void setRow(Integer row)
```

getCol
```
public Integer getCol()
```

setCol
```
public void setCol(Integer col)
```

getStartInBioChar
```
public Long getStartInBioChar()
```

setStartInBioChar

public void setStartInBioChar(Long startInBioChar)

getStrand
```
public String getStrand()
```
Returns:

Strand on which the reporter aligns to the biologicalCharacteristic. True=plus strand. False=minus strand.

setStrand

public void setStrand(String strand)

getCompositeSequence

public CompositeSequence getCompositeSequence()

setCompositeSequence

public void setCompositeSequence(CompositeSequence compositeSequence)

getImmobilizedCharacteristic
```
public BioSequence getImmobilizedCharacteristic()
```
Returns:

The sequence that is on the array for this reporter.

setImmobilizedCharacteristic

public void setImmobilizedCharacteristic(BioSequence immobilizedCharacteristic)