Package ubic.gemma.core.loader.expression.arrayDesign

Class Reporter

java.lang.Object
ubic.gemma.model.common.AbstractIdentifiable
ubic.gemma.model.common.AbstractDescribable
ubic.gemma.core.loader.expression.arrayDesign.Reporter
All Implemented Interfaces:
Serializable, Describable, Identifiable
public class Reporter extends AbstractDescribable implements Serializable
A "probe" (Affymetrix); for other types of arrays, there is no practical distinction between compositesequences and reporters, and all analysis would take place at the level of CompositeSequences. For a brief time this was part of our core data model; but currently this is used only transiently during parsing etc. of Affymetrix platform sequence files.
See Also:

  • Constructor Details

    • Reporter

      public Reporter()
      No-arg constructor added to satisfy javabean contract

  • Method Details

    • getRow

      public Integer getRow()

    • setRow

      public void setRow(Integer row)

    • getCol

      public Integer getCol()

    • setCol

      public void setCol(Integer col)

    • getStartInBioChar

      public Long getStartInBioChar()

    • setStartInBioChar

      public void setStartInBioChar(Long startInBioChar)

    • getStrand

      public String getStrand()
      Returns:
      Strand on which the reporter aligns to the biologicalCharacteristic. True=plus strand. False=minus strand.

    • setStrand

      public void setStrand(String strand)

    • getCompositeSequence

      public CompositeSequence getCompositeSequence()

    • setCompositeSequence

      public void setCompositeSequence(CompositeSequence compositeSequence)

    • getImmobilizedCharacteristic

      public BioSequence getImmobilizedCharacteristic()
      Returns:
      The sequence that is on the array for this reporter.

    • setImmobilizedCharacteristic

      public void setImmobilizedCharacteristic(BioSequence immobilizedCharacteristic)

    • equals

      public boolean equals(Object object)
      Description copied from class: AbstractIdentifiable
      Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.
      Specified by:
      equals in class AbstractIdentifiable