Package ubic.gemma.core.loader.expression.geo.fetcher

Class DatasetFetcher

java.lang.Object

ubic.gemma.core.loader.util.fetcher.AbstractFetcher

ubic.gemma.core.loader.util.fetcher.FtpFetcher

ubic.gemma.core.loader.expression.geo.fetcher.GeoFetcher

ubic.gemma.core.loader.expression.geo.fetcher.DatasetFetcher

All Implemented Interfaces:

Fetcher

Direct Known Subclasses:

LocalDatasetFetcher

public class DatasetFetcher
extends GeoFetcher

Retrieve GEO GDS files from the NCBI FTP server.

Author:

pavlidis

Field Summary

Fields inherited from class ubic.gemma.core.loader.util.fetcher.FtpFetcher

avoidDownload, ftpClient, netDataSourceUtil

Fields inherited from class ubic.gemma.core.loader.util.fetcher.AbstractFetcher

allowUseExisting, force, INFO_UPDATE_INTERVAL, localBasePath, log, remoteBaseDir

Constructor Summary

Constructors

Constructor	Description
DatasetFetcher()

Method Summary

Modifier and Type	Method	Description
protected String	formRemoteFilePath(String identifier)
protected void	initConfig()

Methods inherited from class ubic.gemma.core.loader.expression.geo.fetcher.GeoFetcher

formLocalFilePath, setNetDataSourceUtil

Methods inherited from class ubic.gemma.core.loader.util.fetcher.FtpFetcher

defineTask, doTask, fetch, fetch, getExpectedSize, getNetDataSourceUtil, setAvoidDownload

Methods inherited from class ubic.gemma.core.loader.util.fetcher.AbstractFetcher

fetchedFile, fetchedFile, getExistingFile, getLocalBasePath, isForce, mkdir, mkdir, setAllowUseExisting, setForce, waitForDownload

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

DatasetFetcher

public DatasetFetcher()

Method Details

formRemoteFilePath

protected String formRemoteFilePath(String identifier)

Specified by:

formRemoteFilePath in class AbstractFetcher

initConfig

protected void initConfig()

Specified by:

initConfig in class AbstractFetcher