Package ubic.gemma.core.loader.expression.geo.fetcher

Class LocalDatasetFetcher

java.lang.Object

ubic.gemma.core.loader.util.fetcher.AbstractFetcher

ubic.gemma.core.loader.util.fetcher.FtpFetcher

ubic.gemma.core.loader.expression.geo.fetcher.GeoFetcher

ubic.gemma.core.loader.expression.geo.fetcher.DatasetFetcher

ubic.gemma.core.loader.expression.geo.fetcher.LocalDatasetFetcher

All Implemented Interfaces:

Fetcher

public class LocalDatasetFetcher
extends DatasetFetcher

Used for testing, but might have other uses, to fetch GEO data from local files instead of the GEO website.

Author:

pavlidis

Field Summary

Fields inherited from class ubic.gemma.core.loader.util.fetcher.FtpFetcher

avoidDownload, ftpClient, netDataSourceUtil

Fields inherited from class ubic.gemma.core.loader.util.fetcher.AbstractFetcher

allowUseExisting, force, INFO_UPDATE_INTERVAL, localBasePath, log, remoteBaseDir

Constructor Summary

Constructors

Constructor	Description
LocalDatasetFetcher(String localPath)

Method Summary

Modifier and Type	Method	Description
Collection<File>	fetch(String accession)	Fetch files according to the identifier provided.

Methods inherited from class ubic.gemma.core.loader.expression.geo.fetcher.DatasetFetcher

formRemoteFilePath, initConfig

Methods inherited from class ubic.gemma.core.loader.expression.geo.fetcher.GeoFetcher

formLocalFilePath, setNetDataSourceUtil

Methods inherited from class ubic.gemma.core.loader.util.fetcher.FtpFetcher

defineTask, doTask, fetch, getExpectedSize, getNetDataSourceUtil, setAvoidDownload

Methods inherited from class ubic.gemma.core.loader.util.fetcher.AbstractFetcher

fetchedFile, fetchedFile, getExistingFile, getLocalBasePath, isForce, mkdir, mkdir, setAllowUseExisting, setForce, waitForDownload

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

LocalDatasetFetcher

public LocalDatasetFetcher(String localPath)

Method Details

fetch

public Collection<File> fetch(String accession)

Description copied from interface: Fetcher

Fetch files according to the identifier provided.

Specified by:

fetch in interface Fetcher

Overrides:

fetch in class FtpFetcher

Parameters:

accession - identifier

Returns:

local files