Uses of Class
ubic.gemma.core.loader.expression.geo.model.GeoData

Packages that use GeoData

Package	Description
ubic.gemma.core.loader.expression.geo
ubic.gemma.core.loader.expression.geo.model
ubic.gemma.core.loader.expression.geo.service

Uses of GeoData in ubic.gemma.core.loader.expression.geo

Subinterfaces with type arguments of type GeoData in ubic.gemma.core.loader.expression.geo

Modifier and Type	Interface	Description
interface	GeoConverter

Methods in ubic.gemma.core.loader.expression.geo that return types with arguments of type GeoData

Modifier and Type	Method	Description
Collection<? extends GeoData>	GeoDomainObjectGenerator.generate(String geoAccession)

Methods in ubic.gemma.core.loader.expression.geo with parameters of type GeoData

Modifier and Type	Method	Description
Identifiable	GeoConverter.convert(GeoData geoObject)
Identifiable	GeoConverterImpl.convert(GeoData geoObject)

Method parameters in ubic.gemma.core.loader.expression.geo with type arguments of type GeoData

Modifier and Type	Method	Description
Collection<Identifiable>	GeoConverter.convert(Collection<? extends GeoData> geoObjects)
<T extends Identifiable> Collection<T>	GeoConverter.convert(Collection<? extends GeoData> geoObjects, Class<T> dataType)	Convert a collection of GeoData objects, retaining only elements of the specified data type.
Collection<Identifiable>	GeoConverterImpl.convert(Collection<? extends GeoData> geoObjects)
<T extends Identifiable> Collection<T>	GeoConverterImpl.convert(Collection<? extends GeoData> geoObjects, Class<T> dataType)

Uses of GeoData in ubic.gemma.core.loader.expression.geo.model

Subclasses of GeoData in ubic.gemma.core.loader.expression.geo.model

Modifier and Type	Class	Description
class	GeoDataset	A GEO-curated dataset.
class	GeoPlatform	Bean describing a microarray platform in GEO
class	GeoRecord	Used to contain GEO summary information from the 'Browse' views.
class	GeoSample	Represents a sample (GSM) in GEO.
class	GeoSeries	Represents a set of GEO samples that were submitted together.
class	GeoSubset	Represents a subset of samples.

Uses of GeoData in ubic.gemma.core.loader.expression.geo.service

Method parameters in ubic.gemma.core.loader.expression.geo.service with type arguments of type GeoData

Modifier and Type	Method	Description
Collection<?>	GeoService.convertAndPersist(Collection<? extends GeoData> parseResult, boolean doSampleMatching, boolean splitByPlatform, boolean allowSuperSeriesImport, boolean allowSubSeriesImport)	Convert an already-fetched series and persist the resulting experiment(s).
Collection<?>	GeoServiceImpl.convertAndPersist(Collection<? extends GeoData> parseResult, boolean doSampleMatching, boolean splitByPlatform, boolean allowSuperSeriesImport, boolean allowSubSeriesImport)
Collection<ArrayDesign>	GeoService.loadPlatforms(String geoAccession, Collection<? extends GeoData> platforms)	Convert already-fetched platform data and persist the resulting array designs.
Collection<ArrayDesign>	GeoServiceImpl.loadPlatforms(String geoAccession, Collection<? extends GeoData> platforms)