Uses of Class
ubic.gemma.core.loader.expression.geo.model.GeoPlatform
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Packages that use GeoPlatform Package Description ubic.gemma.core.loader.expression.geo ubic.gemma.core.loader.expression.geo.model -
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Uses of GeoPlatform in ubic.gemma.core.loader.expression.geo
Methods in ubic.gemma.core.loader.expression.geo that return types with arguments of type GeoPlatform Modifier and Type Method Description Map<String,GeoPlatform>
GeoParseResult. getPlatformMap()
Map<String,GeoPlatform>
GeoParseResult. getPlatforms()
static Map<GeoPlatform,List<GeoSample>>
DatasetCombiner. getPlatformSampleMap(GeoSeries geoSeries)
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Uses of GeoPlatform in ubic.gemma.core.loader.expression.geo.model
Methods in ubic.gemma.core.loader.expression.geo.model that return GeoPlatform Modifier and Type Method Description GeoPlatform
GeoDataset. getPlatform()
Methods in ubic.gemma.core.loader.expression.geo.model that return types with arguments of type GeoPlatform Modifier and Type Method Description Collection<GeoPlatform>
GeoSample. getPlatforms()
Methods in ubic.gemma.core.loader.expression.geo.model with parameters of type GeoPlatform Modifier and Type Method Description void
GeoSample. addPlatform(GeoPlatform platform)
void
GeoValues. addQuantitationType(GeoPlatform platform, String columnName, Integer index)
void
GeoValues. clear(GeoPlatform geoPlatform)
Remove the data for a given platform (use to save memory)void
GeoValues. clear(GeoPlatform platform, List<GeoSample> datasetSamples, Integer quantitationTypeIndex)
If possible, null out the data for a quantitation type on a given platform.Integer[]
GeoValues. getIndices(GeoPlatform platform, List<GeoSample> neededSamples, Integer quantitationType)
Get the indices of the data for a set of samples - this can be used to get a slice of the data.Integer
GeoValues. getQuantitationTypeIndex(GeoPlatform platform, String columnName)
Collection<Integer>
GeoValues. getQuantitationTypes(GeoPlatform samplePlatform)
List<Object>
GeoValues. getValues(GeoPlatform platform, Integer quantitationType, String designElement)
List<Object>
GeoValues. getValues(GeoPlatform platform, Integer quantitationType, String designElement, Integer[] indices)
void
GeoDataset. setPlatform(GeoPlatform platform)
Method parameters in ubic.gemma.core.loader.expression.geo.model with type arguments of type GeoPlatform Modifier and Type Method Description void
GeoSample. setPlatforms(Collection<GeoPlatform> platforms)
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