Package ubic.gemma.core.loader.expression.geo.singleCell

Interface ArchiveBasedSingleCellDetector

All Superinterfaces:

SingleCellDetector

All Known Implementing Classes:

GeoSingleCellDetector, MexDetector

public interface ArchiveBasedSingleCellDetector
extends SingleCellDetector

Interface implemented by SingleCellDetector have the capabilities of looking-up archives.

Author:

poirigui

Field Summary

Fields

Modifier and Type	Field	Description
static final long	DEFAULT_MAX_ENTRY_SIZE_IN_ARCHIVE_TO_SKIP
static final long	DEFAULT_MAX_NUMBER_OF_ENTRIES_TO_SKIP

Method Summary

Modifier and Type	Method	Description
void	setMaxEntrySizeInArchiveToSkip(long maxEntrySizeInArchiveToSkip)	Set the maximum size of an archive entry to skip the supplementary file altogether.
void	setMaxNumberOfEntriesToSkip(long maxNumberOfEntriesToSkip)	Set the maximum number of archive entries to skip in order to ignore the supplementary file altogether.

Methods inherited from interface ubic.gemma.core.loader.expression.geo.singleCell.SingleCellDetector

downloadSingleCellData, downloadSingleCellData, getAdditionalSupplementaryFiles, getAdditionalSupplementaryFiles, getSingleCellDataLoader, hasSingleCellData, hasSingleCellData, setDownloadDirectory, setRetryPolicy

Field Details

DEFAULT_MAX_ENTRY_SIZE_IN_ARCHIVE_TO_SKIP

static final long DEFAULT_MAX_ENTRY_SIZE_IN_ARCHIVE_TO_SKIP

See Also:

• Constant Field Values

DEFAULT_MAX_NUMBER_OF_ENTRIES_TO_SKIP

static final long DEFAULT_MAX_NUMBER_OF_ENTRIES_TO_SKIP

See Also:

• Constant Field Values

Method Details

setMaxEntrySizeInArchiveToSkip

void setMaxEntrySizeInArchiveToSkip(long maxEntrySizeInArchiveToSkip)

Set the maximum size of an archive entry to skip the supplementary file altogether.

Use -1 to indicate no limit.

Note that if a relevant file was previously found in the archive, it will not be skipped.

setMaxNumberOfEntriesToSkip

void setMaxNumberOfEntriesToSkip(long maxNumberOfEntriesToSkip)

Set the maximum number of archive entries to skip in order to ignore the supplementary file altogether.

Use -1 to indicate no limit.

Note that if a relevant file was previously found in the archive, it will not be ignored.