ubic.gemma.core.loader.expression.geo.singleCell (Gemma 1.32.0 API)

This package contains specific logic for dealing with single-cell data from GEO.

Interface Summary
Interface	Description
ArchiveBasedSingleCellDetector	Interface implemented by `SingleCellDetector` have the capabilities of looking-up archives.
SeriesAwareSingleCellDetector	Interface implemented by single-cell detector that can contextualize a sample within a series.
SingleCellDetector	Interface for single-cell data detectors from GEO.

Class Summary
Class	Description
AbstractSingleCellDetector
AbstractSingleFileInSeriesSingleCellDetector	Handle detection and download of single-cell data from a single file in the supplementary materials of a GEO series.
AbstractSingleH5FileInSeriesSingleCellDetector
AnnDataDetector	Detects AnnData in GEO series.
GeoBioAssayMapper	Strategy to match a `BioAssay` against a sample name provided by GEO.
GeoSingleCellDetector	This is the main single-cell data detector that delegates to other more specific detectors.
LoomSingleCellDetector	Detects Loom files in series and samples.
MexDetector	Detects 10X MEX data from GEO series and samples.
SeuratDiskDetector

Package ubic.gemma.core.loader.expression.geo.singleCell