Package ubic.gemma.core.loader.expression.geo.singleCell

@ParametersAreNonnullByDefault package ubic.gemma.core.loader.expression.geo.singleCell

This package contains specific logic for dealing with single-cell data from GEO.

Author:

poirigui

Related Packages

Package	Description
ubic.gemma.core.loader.expression.geo
ubic.gemma.core.loader.expression.geo.fetcher
ubic.gemma.core.loader.expression.geo.fetcher2	Provides classes for fetching data from various sources.
ubic.gemma.core.loader.expression.geo.model
ubic.gemma.core.loader.expression.geo.service
ubic.gemma.core.loader.expression.geo.util

Class	Description
AbstractSingleCellDetector
AbstractSingleFileInSeriesSingleCellDetector	Handle detection and download of single-cell data from a single file in the supplementary materials of a GEO series.
AbstractSingleH5FileInSeriesSingleCellDetector
AnnDataDetector	Detects AnnData in GEO series.
ArchiveBasedSingleCellDetector	Interface implemented by SingleCellDetector have the capabilities of looking-up archives.
GeoBioAssayMapper	Strategy to match a BioAssay against a sample name provided by GEO.
GeoMexSingleCellDataLoaderConfigurer
GeoSingleCellDetector	This is the main single-cell data detector that delegates to other more specific detectors.
LoomSingleCellDetector	Detects Loom files in series and samples.
MexDetector	Detects MEX data from GEO series and samples.
NoSingleCellDataFoundException
SeriesAwareSingleCellDetector	Interface implemented by single-cell detector that can contextualize a sample within a series.
SeuratDiskDetector
SingleCellDetector	Interface for single-cell data detectors from GEO.