Package ubic.gemma.core.loader.expression.geo.singleCell

Interface SeriesAwareSingleCellDetector

All Superinterfaces:

SingleCellDetector

All Known Implementing Classes:

GeoSingleCellDetector, MexDetector

public interface SeriesAwareSingleCellDetector
extends SingleCellDetector

Interface implemented by single-cell detector that can contextualize a sample within a series.

Author:

poirigui

Method Summary

Modifier and Type	Method	Description
Path	downloadSingleCellData(GeoSeries series, GeoSample sample)
List<String>	getAdditionalSupplementaryFiles(GeoSeries series, GeoSample sample)
boolean	hasSingleCellData(GeoSeries series, GeoSample sample)

Methods inherited from interface ubic.gemma.core.loader.expression.geo.singleCell.SingleCellDetector

downloadSingleCellData, downloadSingleCellData, getAdditionalSupplementaryFiles, getAdditionalSupplementaryFiles, getSingleCellDataLoader, hasSingleCellData, hasSingleCellData, setDownloadDirectory, setRetryPolicy

Method Detail

hasSingleCellData

boolean hasSingleCellData(GeoSeries series,
                          GeoSample sample)

downloadSingleCellData

Path downloadSingleCellData(GeoSeries series,
                            GeoSample sample)
                     throws UnsupportedOperationException,
                            NoSingleCellDataFoundException,
                            IOException

Throws:

UnsupportedOperationException

NoSingleCellDataFoundException

IOException

getAdditionalSupplementaryFiles

List<String> getAdditionalSupplementaryFiles(GeoSeries series,
                                             GeoSample sample)