Package ubic.gemma.core.loader.expression.geo.singleCell

Class SeuratDiskDetector

java.lang.Object

ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleCellDetector

ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleFileInSeriesSingleCellDetector

ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleH5FileInSeriesSingleCellDetector

ubic.gemma.core.loader.expression.geo.singleCell.SeuratDiskDetector

All Implemented Interfaces:

SingleCellDetector

public class SeuratDiskDetector
extends AbstractSingleH5FileInSeriesSingleCellDetector

Field Summary

Fields inherited from class ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleCellDetector

log

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	SeuratDiskDetector()

Method Summary

Modifier and Type	Method	Description
protected boolean	accepts(String supplementaryFile)	Indicate if the given supplementary file is accepted.
SingleCellDataLoader	getSingleCellDataLoader(GeoSeries series, SingleCellDataLoaderConfig config)	Obtain a single cell data loader for the given GEO series based on previously downloading data.

Methods inherited from class ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleH5FileInSeriesSingleCellDetector

existsAndHasExpectedSize, isTruncated

Methods inherited from class ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleFileInSeriesSingleCellDetector

downloadSingleCellData, downloadSingleCellData, downloadSingleCellData, getAdditionalSupplementaryFiles, getAdditionalSupplementaryFiles, getDest, hasSingleCellData, hasSingleCellData

Methods inherited from class ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleCellDetector

getDownloadDirectory, getSizeInBytes, openSupplementaryFileAsStream, retry, setDownloadDirectory, setFTPClientFactory, setRetryPolicy

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SeuratDiskDetector

protected SeuratDiskDetector()

Method Details

accepts

protected boolean accepts(String supplementaryFile)

Description copied from class: AbstractSingleFileInSeriesSingleCellDetector

Indicate if the given supplementary file is accepted.

The default implementation checks if the file ends with the extension (or the extension + .gz).

Overrides:

accepts in class AbstractSingleFileInSeriesSingleCellDetector

getSingleCellDataLoader

public SingleCellDataLoader getSingleCellDataLoader(GeoSeries series,
 SingleCellDataLoaderConfig config)

Description copied from interface: SingleCellDetector

Obtain a single cell data loader for the given GEO series based on previously downloading data.