Package ubic.gemma.core.loader.expression.geo.singleCell

Class LoomSingleCellDetector

java.lang.Object

ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleCellDetector

ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleFileInSeriesSingleCellDetector

ubic.gemma.core.loader.expression.geo.singleCell.LoomSingleCellDetector

All Implemented Interfaces:

SingleCellDetector

public class LoomSingleCellDetector
extends AbstractSingleFileInSeriesSingleCellDetector

Detects Loom files in series and samples.

Downloading files in sample and loading is not supported yet.

Author:

poirigui

Field Summary

Fields inherited from class ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleCellDetector

log

Constructor Summary

Constructors

Constructor	Description
LoomSingleCellDetector()

Method Summary

Modifier and Type	Method	Description
SingleCellDataLoader	getSingleCellDataLoader(GeoSeries series, SingleCellDataLoaderConfig config)	Obtain a single cell data loader for the given GEO series based on previously downloading data.
boolean	hasSingleCellData(GeoSample sample)	Detection is not supported at the sample level.

Methods inherited from class ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleFileInSeriesSingleCellDetector

accepts, downloadSingleCellData, downloadSingleCellData, downloadSingleCellData, getAdditionalSupplementaryFiles, getAdditionalSupplementaryFiles, getDest, hasSingleCellData

Methods inherited from class ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleCellDetector

existsAndHasExpectedSize, getDownloadDirectory, getSizeInBytes, openSupplementaryFileAsStream, retry, setDownloadDirectory, setFTPClientFactory, setRetryPolicy

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

LoomSingleCellDetector

public LoomSingleCellDetector()

Method Details

getSingleCellDataLoader

public SingleCellDataLoader getSingleCellDataLoader(GeoSeries series,
 SingleCellDataLoaderConfig config)

Description copied from interface: SingleCellDetector

Obtain a single cell data loader for the given GEO series based on previously downloading data.

hasSingleCellData

public boolean hasSingleCellData(GeoSample sample)

Description copied from class: AbstractSingleFileInSeriesSingleCellDetector

Detection is not supported at the sample level.

Specified by:

hasSingleCellData in interface SingleCellDetector

Overrides:

hasSingleCellData in class AbstractSingleFileInSeriesSingleCellDetector