LoomSingleCellDetector (Gemma 1.32.0 API)

java.lang.Object
- ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleCellDetector
- - ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleFileInSeriesSingleCellDetector
  - - ubic.gemma.core.loader.expression.geo.singleCell.LoomSingleCellDetector

All Implemented Interfaces:

SingleCellDetector
```
public class LoomSingleCellDetector
extends AbstractSingleFileInSeriesSingleCellDetector
```
Detects Loom files in series and samples.
Downloading files in sample and loading is not supported yet.

Author:

poirigui

Field Summary
- Fields inherited from class ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleCellDetector
  log

Constructor Summary

Constructors
Constructor Description

LoomSingleCellDetector()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`SingleCellDataLoader`	`getSingleCellDataLoader(GeoSeries series, SingleCellDataLoaderConfig config)`	Obtain a single cell data loader for the given GEO series based on previously downloading data.
`boolean`	`hasSingleCellData(GeoSample sample)`	Detection is not supported at the sample level.

Methods inherited from class ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleFileInSeriesSingleCellDetector
accepts, downloadSingleCellData, downloadSingleCellData, downloadSingleCellData, getAdditionalSupplementaryFiles, getAdditionalSupplementaryFiles, getDest, hasSingleCellData

Methods inherited from class ubic.gemma.core.loader.expression.geo.singleCell.AbstractSingleCellDetector
existsAndHasExpectedSize, getDownloadDirectory, getSizeInBytes, openSupplementaryFileAsStream, retry, setDownloadDirectory, setFTPClientFactory, setRetryPolicy

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - LoomSingleCellDetector
```
public LoomSingleCellDetector()
```
- Method Detail
  - getSingleCellDataLoader
```
public SingleCellDataLoader getSingleCellDataLoader(GeoSeries series,
                                                    SingleCellDataLoaderConfig config)
```
    Description copied from interface: SingleCellDetector
    
    Obtain a single cell data loader for the given GEO series based on previously downloading data.
  - hasSingleCellData
```
public boolean hasSingleCellData(GeoSample sample)
```
    Description copied from class: AbstractSingleFileInSeriesSingleCellDetector
    
    Detection is not supported at the sample level.
    
    Specified by:
    
    hasSingleCellData in interface SingleCellDetector
    
    Overrides:
    
    hasSingleCellData in class AbstractSingleFileInSeriesSingleCellDetector