Package ubic.gemma.core.loader.expression.singleCell.metadata

Class CellLevelCharacteristicsWriter

java.lang.Object

ubic.gemma.core.loader.expression.singleCell.metadata.CellLevelCharacteristicsWriter

public class CellLevelCharacteristicsWriter
extends Object

Constructor Summary

Constructors

Constructor	Description
CellLevelCharacteristicsWriter()

Method Summary

Modifier and Type	Method	Description
void	setUseBioAssayIds(boolean useBioAssayIds)	Use the BioAssay numerical ID instead of its name.
void	write(Collection<CellLevelCharacteristics> cellLevelCharacteristics, SingleCellDimension dimension, Writer writer)	Write multiple sets of cell-level characteristics to a writer.
void	write(CellLevelCharacteristics cellLevelCharacteristics, SingleCellDimension dimension, Writer writer)	Write a single set of cell-level characteristics to a writer.
void	write(CellTypeAssignment cellLevelCharacteristics, SingleCellDimension dimension, Writer writer)	Write a single cell type assignment to a writer.
void	write(SingleCellDimension dimension, Writer writer)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

CellLevelCharacteristicsWriter

public CellLevelCharacteristicsWriter()

Method Details

write

public void write(SingleCellDimension dimension,
 Writer writer)
           throws IOException

Throws:

IOException

write

public void write(CellTypeAssignment cellLevelCharacteristics,
 SingleCellDimension dimension,
 Writer writer)
           throws IOException

Write a single cell type assignment to a writer.

No category_id column is generated.

Throws:

IOException

write

public void write(CellLevelCharacteristics cellLevelCharacteristics,
 SingleCellDimension dimension,
 Writer writer)
           throws IOException

Write a single set of cell-level characteristics to a writer.

No category_id column is generated.

Throws:

IOException

write

public void write(Collection<CellLevelCharacteristics> cellLevelCharacteristics,
 SingleCellDimension dimension,
 Writer writer)
           throws IOException

Write multiple sets of cell-level characteristics to a writer.

This includes an additional column, category_id, to distinguish between the different cell-level characteristics that use the same category.

Throws:

IOException

setUseBioAssayIds

public void setUseBioAssayIds(boolean useBioAssayIds)

Use the BioAssay numerical ID instead of its name.